Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

15 months ago Sabiha ▴ 20

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4.9k

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FoldChange DiffBind lfcShrink

updated 20 months ago by Rory Stark ★ 5.2k • written 21 months ago by bhandary.8590 ▴ 20

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1.4k

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FoldChange DiffBind lfcShrink Cut&TagData

22 months ago • updated 21 months ago bhandary.8590 ▴ 20

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2.1k

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DESeq2 TPM Foldchange

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by dadca596 • 0

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1.2k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.2 years ago by Gordon Smyth 52k • written 3.2 years ago by johndavidgriner74 • 0

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1.5k

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sign FoldChange DESeq2 reference

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by yampolsk • 0

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7.0k

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DifferentialExpression DEA FC FoldChange edgeR

3.6 years ago zhxiaokang ▴ 20

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3.0k

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EdgeR RNAseq Foldchange

updated 3.8 years ago by swbarnes2 ★ 1.4k • written 3.8 years ago by najib • 0

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4.0k

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foldchange topGO DifferentialExpression enrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by lessismore ▴ 20

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1.8k

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limma microarray foldchange DEG GEO

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by Pietro ▴ 40

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1.7k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.0 years ago by Michael Love 43k • written 6.2 years ago by fiona.dick91 ▴ 60

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1.7k

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limma RNAseq foldchange

6.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Popular Question to Ariel Chernomoretz ▴ 170