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StatisticalMethod FoldChange edgeR RNASeq

13 months ago Sabiha ▴ 20

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4.7k

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FoldChange DiffBind lfcShrink

updated 18 months ago by Rory Stark ★ 5.2k • written 19 months ago by bhandary.8590 ▴ 20

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1.3k

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FoldChange DiffBind lfcShrink Cut&TagData

19 months ago bhandary.8590 ▴ 20

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2.0k

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DESeq2 TPM Foldchange

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by dadca596 • 0

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1.1k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.1 years ago by Gordon Smyth 52k • written 3.1 years ago by johndavidgriner74 • 0

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1.5k

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sign FoldChange DESeq2 reference

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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6.5k

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DifferentialExpression DEA FC FoldChange edgeR

3.4 years ago zhxiaokang ▴ 20

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2.9k

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EdgeR RNAseq Foldchange

updated 3.6 years ago by swbarnes2 ★ 1.4k • written 3.6 years ago by najib • 0

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3.4k

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foldchange topGO DifferentialExpression enrichment

updated 4.2 years ago by Gordon Smyth 52k • written 4.2 years ago by lessismore ▴ 20

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1.7k

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limma microarray foldchange DEG GEO

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by Pietro ▴ 40

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.8 years ago by Michael Love 43k • written 6.1 years ago by fiona.dick91 ▴ 60

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1.6k

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limma RNAseq foldchange

5.9 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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