Bioconductor Foldchange

Showing : Foldchange • reset

vote

replies

878

views

StatisticalMethod FoldChange edgeR RNASeq

12 months ago Sabiha ▴ 20

vote

4.5k

views

FoldChange DiffBind lfcShrink

updated 17 months ago by Rory Stark ★ 5.2k • written 17 months ago by bhandary.8590 ▴ 20

votes

replies

1.3k

views

FoldChange DiffBind lfcShrink Cut&TagData

18 months ago bhandary.8590 ▴ 20

votes

replies

1.9k

views

DESeq2 TPM Foldchange

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by dadca596 • 0

votes

1.1k

views

edgeR RNA-Seq log2 foldchange q_value

updated 3.0 years ago by Gordon Smyth 52k • written 3.0 years ago by johndavidgriner74 • 0

votes

replies

1.4k

views

sign FoldChange DESeq2 reference

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by yampolsk • 0

votes

replies

6.3k

views

DifferentialExpression DEA FC FoldChange edgeR

3.3 years ago zhxiaokang ▴ 20

votes

replies

2.8k

views

EdgeR RNAseq Foldchange

updated 3.5 years ago by swbarnes2 ★ 1.4k • written 3.5 years ago by najib • 0

votes

replies

3.2k

views

foldchange topGO DifferentialExpression enrichment

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by lessismore ▴ 20

votes

replies

1.7k

views

limma microarray foldchange DEG GEO

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by Pietro ▴ 40

vote

1.6k

views

DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.7 years ago by Michael Love 43k • written 6.0 years ago by fiona.dick91 ▴ 60

votes

replies

1.6k

views

limma RNAseq foldchange

5.8 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

Awards • All