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Foldchange
•
reset
1
vote
2
replies
1.2k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
21 months ago
Sabiha
▴ 20
1
vote
1
reply
5.1k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 2.2 years ago by
Rory Stark
★ 5.2k • written 2.2 years ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.6k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
2.3 years ago
bhandary.8590
▴ 20
0
votes
2
replies
2.3k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
dadca596
• 0
0
votes
1
reply
1.3k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.7 years ago by
Gordon Smyth
53k • written 3.7 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.7k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
yampolsk
• 0
3
votes
5
replies
7.6k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
4.1 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.3k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 4.3 years ago by
swbarnes2
★ 1.4k • written 4.3 years ago by
najib
• 0
0
votes
7
replies
4.5k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.9 years ago by
Gordon Smyth
53k • written 4.9 years ago by
lessismore
▴ 20
4
votes
5
replies
2.0k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.7 years ago by
Gordon Smyth
53k • written 5.7 years ago by
Pietro
▴ 40
1
vote
1
reply
1.8k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 6.5 years ago by
Michael Love
43k • written 6.7 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.8k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.6 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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Michael Love
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