Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

10 months ago Sabiha ▴ 20

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3.8k

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FoldChange DiffBind lfcShrink

updated 15 months ago by Rory Stark ★ 5.2k • written 16 months ago by bhandary.8590 ▴ 20

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1.2k

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FoldChange DiffBind lfcShrink Cut&TagData

17 months ago • updated 16 months ago bhandary.8590 ▴ 20

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1.9k

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DESeq2 TPM Foldchange

updated 2.6 years ago by Michael Love 42k • written 2.6 years ago by dadca596 • 0

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1.1k

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edgeR RNA-Seq log2 foldchange q_value

updated 2.8 years ago by Gordon Smyth 51k • written 2.8 years ago by johndavidgriner74 • 0

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1.4k

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sign FoldChange DESeq2 reference

updated 2.9 years ago by Michael Love 42k • written 2.9 years ago by yampolsk • 0

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6.0k

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DifferentialExpression DEA FC FoldChange edgeR

3.2 years ago zhxiaokang ▴ 20

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2.7k

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EdgeR RNAseq Foldchange

updated 3.3 years ago by swbarnes2 ★ 1.4k • written 3.4 years ago by najib • 0

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2.9k

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foldchange topGO DifferentialExpression enrichment

updated 4.0 years ago by Gordon Smyth 51k • written 4.0 years ago by lessismore ▴ 20

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1.6k

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limma microarray foldchange DEG GEO

updated 4.7 years ago by Gordon Smyth 51k • written 4.8 years ago by Pietro ▴ 40

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1.5k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.5 years ago by Michael Love 42k • written 5.8 years ago by fiona.dick91 ▴ 60

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1.6k

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limma RNAseq foldchange

5.7 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k