Bioconductor Foldchange

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StatisticalMethod FoldChange edgeR RNASeq

20 months ago Sabiha ▴ 20

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FoldChange DiffBind lfcShrink

updated 2.1 years ago by Rory Stark ★ 5.2k • written 2.1 years ago by bhandary.8590 ▴ 20

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1.5k

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FoldChange DiffBind lfcShrink Cut&TagData

2.2 years ago bhandary.8590 ▴ 20

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2.2k

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DESeq2 TPM Foldchange

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by dadca596 • 0

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1.3k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.6 years ago by Gordon Smyth 52k • written 3.6 years ago by johndavidgriner74 • 0

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1.7k

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sign FoldChange DESeq2 reference

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by yampolsk • 0

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7.5k

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DifferentialExpression DEA FC FoldChange edgeR

4.0 years ago zhxiaokang ▴ 20

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3.2k

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EdgeR RNAseq Foldchange

updated 4.2 years ago by swbarnes2 ★ 1.4k • written 4.2 years ago by najib • 0

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4.5k

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foldchange topGO DifferentialExpression enrichment

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by lessismore ▴ 20

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limma microarray foldchange DEG GEO

updated 5.6 years ago by Gordon Smyth 52k • written 5.6 years ago by Pietro ▴ 40

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.4 years ago by Michael Love 43k • written 6.6 years ago by fiona.dick91 ▴ 60

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1.8k

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limma RNAseq foldchange

6.5 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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