Showing : GO • reset
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installation of Rsamtools
GO Cancer Rsamtools GO Cancer Rsamtools
13.9 years ago Steve Lianoglou ★ 13k
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Bioconductor resources for immunology
Pathways GO SPIA Pathways GO SPIA
13.9 years ago January Weiner ▴ 240
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1.3k
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limma - 2-color agilent microarray, GO annotation
Annotation GO annotate oligo Annotation GO annotate oligo
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 290
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Difference between go, with_go and with_go_go
GO biomaRt GO biomaRt
13.9 years ago chawla ▴ 190
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1
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1.7k
views
Bug report.
GO GO
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 240
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Biostrings: PWM with background probabilities
GO GO
13.9 years ago Tim Smith ★ 1.1k
1
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2
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plotMDS.dge error
GO GO
updated 14.0 years ago by 53k • written 14.0 years ago by ▴ 50
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2
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1.6k
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cellHTS2 variance by plate calculation?
Normalization GO cellHTS2 Normalization GO cellHTS2
updated 14.0 years ago by ▴ 160 • written 14.0 years ago by ★ 13k
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1
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753
views
Error with package ExpressionView
GO GO
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ★ 13k
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
GO GO
14.0 years ago Joern Toedling ▴ 50
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4
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1.8k
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gwSnpTests in GGtools
SNP GO SNP GO
updated 14.0 years ago by 6.7k • written 14.0 years ago by ★ 13k
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1
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2.6k
views
PFAM gene enrichment test using GOstats and Category
Annotation GO Organism GOstats Category Annotation GO Organism GOstats Category
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 10
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2
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2.1k
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retrieve the level for a GO category
GO Category GO Category
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 150
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9
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2.3k
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problem with GO terms
GO GOstats Category GO GOstats Category
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 620
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package NEWS, README, and INSTALL files available on web site
GO PROcess GO PROcess
14.0 years ago Dan Tenenbaum ★ 8.2k
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1
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1.7k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 14.1 years ago by ★ 11k • written 14.1 years ago by ★ 1.0k
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1
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1.0k
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downloading GO from biomart through bioconductor
GO biomaRt GO biomaRt
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 40
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0
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goSeq error (steve Shen)
GO Category edgeR goseq GO Category edgeR goseq
14.1 years ago Alicia Oshlack ▴ 100
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2
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1.5k
views
goSeq error
GO edgeR goseq GO edgeR goseq
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 70
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3
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comparing two tables
GO GO
updated 14.1 years ago by 25k • written 14.1 years ago by ★ 1.5k
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topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO Visualization graph Rgraphviz topGO GO Visualization graph Rgraphviz topGO
14.1 years ago Joseph Skaf ▴ 20
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5
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1.5k
views
PICS
GO PICS GO PICS
updated 14.1 years ago by ▴ 20 • written 14.1 years ago by ★ 4.3k
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1
reply
694
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annotation file and expression set genechip miRNA 2 array
miRNA Annotation GO miRNA Annotation GO
updated 14.1 years ago by 21k • written 14.1 years ago by ★ 13k
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3
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2.0k
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Ensembl websites offline for maintenance
GO biomaRt GO biomaRt
updated 14.1 years ago by ★ 3.4k • written 14.1 years ago by ▴ 660
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1
reply
707
views
Fwd: Creating One Single Object with Phenotype and Expression Data
GO Cancer GO Cancer
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 30
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Pie chart
GO GeneAnswers GO GeneAnswers
14.1 years ago Guest User ★ 13k
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995
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Bioconductor Digest, Vol 104, Issue 7
GO AnnotationFuncs GO AnnotationFuncs
14.1 years ago Stefan McKinnon Høj-Edwards ▴ 20
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mapping through org.Xx.eg.db packages
GO GO
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 930
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2
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question about xvfb-run GeneAnswers
GO GeneAnswers GO GeneAnswers
updated 14.2 years ago by 68k • written 14.2 years ago by ★ 1.3k
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Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
14.2 years ago Wolfgang Huber ★ 13k
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HowTo: "Extract masked sequences" / "insert Ns for repeat masked regions"
GO BSgenome BSgenome GO BSgenome BSgenome
updated 14.2 years ago by 16k • written 14.2 years ago by ★ 1.6k
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2
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Problems creating topGOdata object!
GO topGO GO topGO
updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 80
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2
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2.6k
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RNA seq analysis of Arabidopsis genome
GO Category goseq GO Category goseq
updated 14.2 years ago by ▴ 50 • written 14.2 years ago by ▴ 10
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871
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Customize normalization on specific time series experiment?
Normalization GO Normalization GO
14.2 years ago Andrea Grilli ▴ 240
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1
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1.0k
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How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 90
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PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 20
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1.0k
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[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
14.2 years ago Julie Zhu ★ 4.3k
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GSEA and edgeR
GO edgeR GO edgeR
updated 14.2 years ago by 53k • written 14.2 years ago by ▴ 930
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2
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1.7k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
14.2 years ago Jing Huang ▴ 380
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5
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2.1k
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topTable (fit) annotation
GO annotate limma GO annotate limma
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 380
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.2 years ago Olivier Lucas ▴ 40
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which DESeq result is more reliable?????
GO GO
14.2 years ago pushp priya ▴ 10
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3
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1.6k
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limma: paired analysis & effects on/interpretation of coefficients
GO affy limma GO affy limma
updated 14.2 years ago by 68k • written 14.2 years ago by ★ 4.1k
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1.5k
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shortread readAligned with BWA
GO ShortRead GO ShortRead
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 280
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8
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3.9k
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views on Rle using GRanges object
RNASeq Coverage GO rtracklayer RNASeq Coverage GO rtracklayer
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 740
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2
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2.1k
views
import.bw to Rle?
GO Cancer convert GO Cancer convert
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 740
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9
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2.7k
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ontoCompare (goTools) : goidvect error
GO goTools GO goTools
14.3 years ago Oana VIGY ▴ 80
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0
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966
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LEA graph correction in topGO
GO graph topGO GO graph topGO
14.3 years ago tom carroll ▴ 10
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0
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1.3k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
14.3 years ago Valerie Obenchain ★ 6.8k
1,936 results • Page 15 of 39
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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