Showing : GO • reset
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1.2k
views
Chippeakanno venn
GO BSgenome annotate BSgenome GO BSgenome annotate BSgenome
updated 14.3 years ago by ★ 4.3k • written 14.3 years ago by ▴ 90
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
14.3 years ago Iain Gallagher ▴ 930
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votes
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1.5k
views
Some problems in combining ExpressionSet objects with the combine() function
Microarray GO Cancer Colon affy limma Microarray GO Cancer Colon affy limma
14.3 years ago James W. MacDonald 68k
0
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2
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1.7k
views
GO enrichment analysis for Salmonella enterica
GO GO
updated 14.3 years ago by ▴ 10 • written 14.3 years ago by ▴ 60
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1
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1.1k
views
[R] Fwd: Rgraphviz installation problem
GO Cancer Rgraphviz GO Cancer Rgraphviz
updated 14.3 years ago by ▴ 30 • written 14.3 years ago by 25k
0
votes
2
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1.6k
views
Possible problem with Rhesus array annotation package
Annotation GO annotate annaffy Annotation GO annotate annaffy
updated 14.3 years ago by ★ 7.2k • written 14.4 years ago by ▴ 30
0
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2
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Find all the genes n genes either side on the chromosome
GO biomaRt GO biomaRt
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 300
0
votes
7
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2.4k
views
error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 14.4 years ago by ▴ 130 • written 14.4 years ago by ▴ 810
0
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3
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1.3k
views
error in coverting readaligned object to GenomeData
GO convert GO convert
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 810
0
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0
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1.1k
views
Help with interpreting GEO derived data values
GO hgu95av2 GO hgu95av2
14.4 years ago Ochsner, Scott A ▴ 60
0
votes
1
reply
1.2k
views
Regarding ChIPpeakAnno::getEnrichedGO function
GO ChIPpeakAnno GO ChIPpeakAnno
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ★ 4.3k
0
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2
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2.8k
views
how to extract GO terms at different level of DAG
GO GO
14.4 years ago Ed ▴ 230
0
votes
0
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1.3k
views
Useful information about Ensembl release 63 mart databases
Annotation GO Yeast Vega Annotation GO Yeast Vega
14.4 years ago Rhoda Kinsella ▴ 660
0
votes
3
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1.4k
views
Bug in hyperGTest for KEGGHyperGParams?
Annotation GO Annotation GO
updated 14.4 years ago by ▴ 610 • written 14.4 years ago by ★ 2.0k
0
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1
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3.4k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 14.4 years ago by ▴ 210 • written 14.4 years ago by ▴ 110
0
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0
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948
views
sequential removeBatchEffect()?
Microarray GO limma Microarray GO limma
14.4 years ago Gordon Smyth 53k
0
votes
0
replies
1.2k
views
ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq Annotation GO biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation GO biomaRt chipseq
14.4 years ago Julie Zhu ★ 4.3k
0
votes
6
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2.6k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ▴ 110
0
votes
0
replies
891
views
[R] help required for GO Annotation problem
Annotation GO Annotation GO
14.4 years ago Iain Gallagher ▴ 930
0
votes
0
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1.3k
views
Bioconductor Digest, Vol 100, Issue 28
GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse
14.4 years ago Dennis.Burian@faa.gov ▴ 90
0
votes
0
replies
1.3k
views
goseq - overrepresented p-values (Alicia Oshlack)
GO Category goseq GO Category goseq
14.4 years ago Gu Mi ▴ 30
0
votes
1
reply
4.3k
views
goseq - overrepresented p-values
GO Category goseq GO Category goseq
updated 14.4 years ago by ▴ 100 • written 14.4 years ago by ▴ 30
0
votes
7
replies
2.2k
views
Working with Agilent 4X44k array,two color experiment
GO affy GO affy
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by ▴ 200
0
votes
1
reply
1.1k
views
about HTqPCR
miRNA Normalization GO HTqPCR miRNA Normalization GO HTqPCR
14.5 years ago Heidi Dvinge ★ 2.0k
0
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0
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1.7k
views
Grouping data in a heatmap
GO GO
14.5 years ago Mark Aquino ▴ 10
0
votes
7
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2.0k
views
vennSelect error
GO hgu133a2 yeast2 affy affycoretools GO hgu133a2 yeast2 affy affycoretools
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 370
0
votes
3
replies
3.3k
views
edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 14.5 years ago by ▴ 320 • written 14.5 years ago by ▴ 260
0
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1
reply
1.6k
views
Packages "clusterProfiler" and "illuminaHumanv4.db" not available for installation
Microarray GO Microarray GO
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
help with Starr
GO Starr GO Starr
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 170
0
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1
reply
1.4k
views
oligo read celfile
GO oligo GO oligo
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 170
0
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0
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1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.5 years ago chawla ▴ 190
0
votes
2
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1.2k
views
getEnrichedGo in ChIPPeakAnno Error
GO GO
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 20
0
votes
2
replies
2.2k
views
Go terms attributes not available on Biomart ensembl
GO probe biomaRt GO probe biomaRt
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 190
0
votes
4
replies
3.2k
views
Any changes in Biomart regarding GO terms? Script crashing today
GO biomaRt GO biomaRt
updated 14.5 years ago by ▴ 540 • written 14.5 years ago by ★ 1.9k
0
votes
2
replies
2.0k
views
GO enrichement and Ensembl ID
GO GO
updated 14.5 years ago by ▴ 740 • written 14.5 years ago by ▴ 240
0
votes
0
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1.0k
views
gcrma on affy xlaevis arrays
GO affy gcrma GO affy gcrma
14.5 years ago Tobias Straub ▴ 10
0
votes
0
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1.5k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.5 years ago chawla ▴ 190
0
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8
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2.3k
views
Gene Lists and Genomes
GO genomes GO genomes
updated 14.6 years ago by ★ 4.2k • written 14.6 years ago by ▴ 240
0
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0
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1.6k
views
getGEO for very large files
GO GEOmetadb GO GEOmetadb
14.6 years ago Sean Davis 21k
0
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0
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1.5k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
4
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4.8k
views
gsea (gene set enrichment analysis) for ranked lists
GO GO
updated 14.6 years ago by ★ 1.6k • written 14.6 years ago by ▴ 120
0
votes
5
replies
1.4k
views
error in hugene10sttranscriptcluster
GO GO
updated 14.6 years ago by 68k • written 14.6 years ago by ▴ 840
0
votes
3
replies
1.8k
views
GO enrichment and pathways
Pathways GO Pathways GO
updated 14.6 years ago by ▴ 240 • written 14.6 years ago by ▴ 240
0
votes
1
reply
1.3k
views
Bioconductor Digest, Vol 98, Issue 6
Microarray Annotation GO probe GOstats Microarray Annotation GO probe GOstats
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 10
0
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5
replies
3.4k
views
image size - How to make bigger images
GO GO
updated 14.6 years ago by ▴ 80 • written 14.6 years ago by ★ 1.5k
0
votes
2
replies
8.7k
views
conditional replace column values with values from a different column
GO GO
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ★ 1.5k
0
votes
5
replies
2.7k
views
GOstats problem with output
Annotation GO GOstats Annotation GO GOstats
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ★ 1.5k
0
votes
1
reply
7.4k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 140
0
votes
0
replies
1.5k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.7 years ago David ▴ 860
0
votes
2
replies
2.2k
views
hgu133plus2hsentrezgprobe install problem
GO Cancer AnnotationDbi GO Cancer AnnotationDbi
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 20
1,936 results • Page 16 of 39
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
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The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
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