Showing : GO • reset
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GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 14.7 years ago by ▴ 930 • written 14.7 years ago by ▴ 860
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views
What is GO term
GO GO
updated 14.7 years ago by ▴ 190 • written 14.7 years ago by ▴ 10
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.7 years ago Paolo Sonego ▴ 140
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1
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2.8k
views
Visualising the GO structure (RNA-seq) using topGO and goseq
Microarray GO Visualization Microarray GO Visualization
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 140
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foreach, doMC, and GOstats problems
GO GOstats GO GOstats
updated 14.7 years ago by ★ 8.2k • written 14.7 years ago by ▴ 570
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1
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3.1k
views
goseq KEGG testing?
Pathways GO PROcess Category goseq Pathways GO PROcess Category goseq
updated 14.7 years ago by ▴ 40 • written 14.7 years ago by ★ 2.0k
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2
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1.6k
views
How to generate Spot Types File?
GO limma casper GO limma casper
updated 14.7 years ago by ▴ 140 • written 14.7 years ago by ▴ 740
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5
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2.7k
views
Get Gene annotation (GO terms)
GO convert GO convert
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 860
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1
reply
751
views
Go annotations
Annotation GO Annotation GO
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 1.5k
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1.3k
views
Discrepancies finding genes with a given GO term
GO Cancer Breast biomaRt GO Cancer Breast biomaRt
14.7 years ago Oscar Rueda ▴ 40
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3
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1.3k
views
limma2annaffy error
GO hgu133a2 GO hgu133a2
updated 14.7 years ago by 68k • written 14.7 years ago by ▴ 370
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4
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1.7k
views
DEGraph demo exprData question
GO DEGraph GO DEGraph
14.7 years ago Dick Beyer ★ 1.4k
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3
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1.4k
views
Please advice
Microarray GO limma Microarray GO limma
updated 14.7 years ago by ▴ 370 • written 14.7 years ago by ★ 6.0k
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1
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1.3k
views
[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
14.7 years ago Julie Zhu ★ 4.3k
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8
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2.8k
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IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
14.7 years ago Dick Beyer ★ 1.4k
0
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1
reply
2.5k
views
Can I know the number of genes in enriched GO category using GOseq
GO annotate Category goseq GO annotate Category goseq
updated 14.7 years ago by ▴ 40 • written 14.7 years ago by ▴ 150
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1
reply
1.3k
views
QC for st gene arrays
GO oligo GO oligo
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 170
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1.2k
views
Problem with read.maimages (Limma): Error in dimnames(x) <- dn
Annotation GO limma Annotation GO limma
14.7 years ago Hari Easwaran ▴ 240
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3
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1.1k
views
lookUp for other terminologies
Annotation GO Annotation GO
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 50
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3
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943
views
GO.db for DO
GO GO
14.7 years ago Matthew Pocock ▴ 50
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1.6k
views
FlowCore/FlowViz issues
GO GO
14.7 years ago Roger Leigh ▴ 60
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1
reply
1.6k
views
edgeR glm fit error
GO GLAD edgeR GO GLAD edgeR
14.7 years ago Gordon Smyth 53k
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2.2k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
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978
views
HTqPCR query
GO HTqPCR GO HTqPCR
14.7 years ago Heidi Dvinge ★ 2.0k
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5
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2.9k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
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2
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3.2k
views
problems with biomaRt
GO biomaRt GO biomaRt
updated 14.8 years ago by ▴ 540 • written 14.8 years ago by ▴ 40
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6
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2.0k
views
problems connecting to Biomart today?
GO biomaRt GO biomaRt
updated 14.8 years ago by ▴ 400 • written 14.8 years ago by ★ 1.9k
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854
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announcing a new version of arrayQualityMetrics in the development branch
GO arrayQualityMetrics GO arrayQualityMetrics
14.8 years ago Wolfgang Huber ★ 13k
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1
reply
3.1k
views
limma topTable annotation
GO hgu133plus2 affy limma convert Category GO hgu133plus2 affy limma convert Category
updated 14.8 years ago by ▴ 130 • written 14.8 years ago by 53k
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930
views
Enriched GO questions
Annotation GO annotate PROcess Annotation GO annotate PROcess
14.8 years ago Julie Zhu ★ 4.3k
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1
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1.0k
views
limma topTable annotation
GO hgu133plus2 affy limma convert GO hgu133plus2 affy limma convert
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 130
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4
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1.9k
views
Using GOstats for a non-model organism
GO Organism GO Organism
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 30
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1
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964
views
biomaRt: uniprot_mart
GO annotate biomaRt GO annotate biomaRt
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 10
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6
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1.1k
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 14.8 years ago by ★ 11k • written 14.8 years ago by ★ 13k
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6
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1.6k
views
can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package
Annotation GO biomaRt Annotation GO biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 290
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0
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1.2k
views
How can reach a specific annotation of phytozome by using biomaRt library
Annotation GO Arabidopsis lyrata biomaRt Annotation GO Arabidopsis lyrata biomaRt
14.8 years ago Sean Davis 21k
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2
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1.0k
views
package for protein MS analysis (SELDI-TOF)
Proteomics GO PROcess Proteomics GO PROcess
updated 14.8 years ago by 1.6k • written 14.8 years ago by ★ 4.1k
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lumiR produces Expression set, not lumi batch
GO GO
14.8 years ago Pan Du ★ 1.2k
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13
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3.1k
views
Hypergeometric test with Disease Ontology
GO hgu95av2 GO hgu95av2
updated 14.8 years ago by ▴ 300 • written 14.8 years ago by ▴ 60
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1.1k
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ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
14.8 years ago Julie Zhu ★ 4.3k
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1
reply
742
views
genetraffic?
GO GeneTraffic GO GeneTraffic
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 10
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4
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1.7k
views
topGO sensitive to the order of "interesting" gene ids
GO topGO GO topGO
updated 14.8 years ago by ▴ 400 • written 14.8 years ago by ▴ 110
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1
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964
views
ChIPpeak Anno RangedData question
GO ChIPpeakAnno GO ChIPpeakAnno
14.8 years ago Julie Zhu ★ 4.3k
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3
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1.7k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 14.9 years ago by ▴ 250 • written 14.9 years ago by ★ 4.1k
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0
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1.1k
views
Question about design in limma
GO GO
14.9 years ago Gordon Smyth 53k
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1.2k
views
Question about design in limma
GO GO
14.9 years ago January Weiner ▴ 370
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0
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811
views
Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
GO GO
14.9 years ago Jenny Drnevich ★ 2.0k
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views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe affy convert Annotation GO probe affy convert
14.9 years ago Paul Geeleher ★ 1.3k
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1
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1.5k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe annotate convert Annotation GO probe annotate convert
updated 14.9 years ago by ★ 1.3k • written 14.9 years ago by ▴ 90
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1.4k
views
RE : RE : RE : maping SNPs
GO TranscriptDb GO TranscriptDb
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 450
1,936 results • Page 17 of 39
Recent ...
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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