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GO
•
reset
0
votes
8
replies
2.7k
views
GoStats and microRNA pipeline using Biomart
GO
GOstats
biomaRt
microRNA
GO
GOstats
biomaRt
microRNA
updated 14.7 years ago by
Iain Gallagher
▴ 930 • written 14.7 years ago by
David
▴ 860
0
votes
1
reply
1.2k
views
What is GO term
GO
GO
updated 14.7 years ago by
Philipp Pagel
▴ 190 • written 14.7 years ago by
李天成
▴ 10
0
votes
0
replies
2.4k
views
Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray
GO
Visualization
graph
topGO
goseq
Microarray
GO
Visualization
graph
topGO
14.7 years ago
Paolo Sonego
▴ 140
0
votes
1
reply
2.8k
views
Visualising the GO structure (RNA-seq) using topGO and goseq
Microarray
GO
Visualization
Microarray
GO
Visualization
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
Paolo Sonego
▴ 140
0
votes
8
replies
2.9k
views
foreach, doMC, and GOstats problems
GO
GOstats
GO
GOstats
updated 14.7 years ago by
Dan Tenenbaum
★ 8.2k • written 14.7 years ago by
Tarca, Adi
▴ 570
0
votes
1
reply
3.1k
views
goseq KEGG testing?
Pathways
GO
PROcess
Category
goseq
Pathways
GO
PROcess
Category
goseq
updated 14.7 years ago by
Matthew Young
▴ 40 • written 14.7 years ago by
Jenny Drnevich
★ 2.0k
0
votes
2
replies
1.6k
views
How to generate Spot Types File?
GO
limma
casper
GO
limma
casper
updated 14.7 years ago by
Casper Shyr
▴ 140 • written 14.7 years ago by
boczniak767
▴ 740
0
votes
5
replies
2.7k
views
Get Gene annotation (GO terms)
GO
convert
GO
convert
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
David
▴ 860
0
votes
1
reply
751
views
Go annotations
Annotation
GO
Annotation
GO
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.3k
views
Discrepancies finding genes with a given GO term
GO
Cancer
Breast
biomaRt
GO
Cancer
Breast
biomaRt
14.7 years ago
Oscar Rueda
▴ 40
0
votes
3
replies
1.3k
views
limma2annaffy error
GO
hgu133a2
GO
hgu133a2
updated 14.7 years ago by
James W. MacDonald
68k • written 14.7 years ago by
mali salmon
▴ 370
0
votes
4
replies
1.7k
views
DEGraph demo exprData question
GO
DEGraph
GO
DEGraph
14.7 years ago
Dick Beyer
★ 1.4k
0
votes
3
replies
1.4k
views
Please advice
Microarray
GO
limma
Microarray
GO
limma
updated 14.7 years ago by
mali salmon
▴ 370 • written 14.7 years ago by
Naomi Altman
★ 6.0k
0
votes
1
reply
1.3k
views
[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO
AnnotationData
ChIPpeakAnno
GO
AnnotationData
ChIPpeakAnno
14.7 years ago
Julie Zhu
★ 4.3k
0
votes
8
replies
2.8k
views
IPI to entrez id
Proteomics
GO
biomaRt
Proteomics
GO
biomaRt
14.7 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
2.5k
views
Can I know the number of genes in enriched GO category using GOseq
GO
annotate
Category
goseq
GO
annotate
Category
goseq
updated 14.7 years ago by
Matthew Young
▴ 40 • written 14.7 years ago by
Biase, Fernando
▴ 150
0
votes
1
reply
1.3k
views
QC for st gene arrays
GO
oligo
GO
oligo
updated 14.7 years ago by
Benilton Carvalho
★ 4.3k • written 14.7 years ago by
Yongde Bao
▴ 170
0
votes
0
replies
1.2k
views
Problem with read.maimages (Limma): Error in dimnames(x) <- dn
Annotation
GO
limma
Annotation
GO
limma
14.7 years ago
Hari Easwaran
▴ 240
0
votes
3
replies
1.1k
views
lookUp for other terminologies
Annotation
GO
Annotation
GO
updated 14.7 years ago by
Martin Morgan
25k • written 14.7 years ago by
Matthew Pocock
▴ 50
0
votes
3
replies
943
views
GO.db for DO
GO
GO
14.7 years ago
Matthew Pocock
▴ 50
0
votes
0
replies
1.6k
views
FlowCore/FlowViz issues
GO
GO
14.7 years ago
Roger Leigh
▴ 60
0
votes
1
reply
1.6k
views
edgeR glm fit error
GO
GLAD
edgeR
GO
GLAD
edgeR
14.7 years ago
Gordon Smyth
53k
0
votes
0
replies
2.2k
views
GO with R and Bioconductor
Transcription
Annotation
GO
GOstats
biomaRt
topGO
GSEABase
goseq
Transcription
Annotation
14.7 years ago
Duke
▴ 210
0
votes
0
replies
978
views
HTqPCR query
GO
HTqPCR
GO
HTqPCR
14.7 years ago
Heidi Dvinge
★ 2.0k
0
votes
5
replies
2.9k
views
GO with R and Bioconductor
Transcription
GO
GOstats
biomaRt
topGO
goseq
Transcription
GO
GOstats
biomaRt
topGO
updated 14.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.7 years ago by
Duke
▴ 210
0
votes
2
replies
3.2k
views
problems with biomaRt
GO
biomaRt
GO
biomaRt
updated 14.8 years ago by
Steffen Durinck
▴ 540 • written 14.8 years ago by
Stefanie Carola Gerstberger
▴ 40
0
votes
6
replies
2.0k
views
problems connecting to Biomart today?
GO
biomaRt
GO
biomaRt
updated 14.8 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 14.8 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
0
replies
854
views
announcing a new version of arrayQualityMetrics in the development branch
GO
arrayQualityMetrics
GO
arrayQualityMetrics
14.8 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
3.1k
views
limma topTable annotation
GO
hgu133plus2
affy
limma
convert
Category
GO
hgu133plus2
affy
limma
convert
Category
updated 14.8 years ago by
David Iles
▴ 130 • written 14.8 years ago by
Gordon Smyth
53k
0
votes
0
replies
930
views
Enriched GO questions
Annotation
GO
annotate
PROcess
Annotation
GO
annotate
PROcess
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.0k
views
limma topTable annotation
GO
hgu133plus2
affy
limma
convert
GO
hgu133plus2
affy
limma
convert
updated 14.8 years ago by
James W. MacDonald
68k • written 14.8 years ago by
David Iles
▴ 130
0
votes
4
replies
1.9k
views
Using GOstats for a non-model organism
GO
Organism
GO
Organism
updated 14.8 years ago by
James W. MacDonald
68k • written 14.8 years ago by
Maureen J. Donlin
▴ 30
0
votes
1
reply
964
views
biomaRt: uniprot_mart
GO
annotate
biomaRt
GO
annotate
biomaRt
updated 14.8 years ago by
James W. MacDonald
68k • written 14.8 years ago by
Le Meur-Rouillard, Nolwenn
▴ 10
0
votes
6
replies
1.1k
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO
Cancer
cdf
GO
Cancer
cdf
updated 14.8 years ago by
Michael Lawrence
★ 11k • written 14.8 years ago by
Steve Lianoglou
★ 13k
0
votes
6
replies
1.6k
views
can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package
Annotation
GO
biomaRt
Annotation
GO
biomaRt
updated 14.8 years ago by
Steve Lianoglou
★ 13k • written 14.8 years ago by
Mao Jianfeng
▴ 290
0
votes
0
replies
1.2k
views
How can reach a specific annotation of phytozome by using biomaRt library
Annotation
GO
Arabidopsis lyrata
biomaRt
Annotation
GO
Arabidopsis lyrata
biomaRt
14.8 years ago
Sean Davis
21k
0
votes
2
replies
1.0k
views
package for protein MS analysis (SELDI-TOF)
Proteomics
GO
PROcess
Proteomics
GO
PROcess
updated 14.8 years ago by
Laurent Gatto
1.6k • written 14.8 years ago by
Guido Hooiveld
★ 4.1k
0
votes
0
replies
1.3k
views
lumiR produces Expression set, not lumi batch
GO
GO
14.8 years ago
Pan Du
★ 1.2k
0
votes
13
replies
3.1k
views
Hypergeometric test with Disease Ontology
GO
hgu95av2
GO
hgu95av2
updated 14.8 years ago by
Gilbert Feng
▴ 300 • written 14.8 years ago by
Ted Morrow
▴ 60
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO
annotate
ChIPpeakAnno
GO
annotate
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
742
views
genetraffic?
GO
GeneTraffic
GO
GeneTraffic
updated 14.8 years ago by
Steve Lianoglou
★ 13k • written 14.8 years ago by
Mary Schmidt
▴ 10
0
votes
4
replies
1.7k
views
topGO sensitive to the order of "interesting" gene ids
GO
topGO
GO
topGO
updated 14.8 years ago by
Adrian Alexa
▴ 400 • written 14.8 years ago by
Paul Rigor
▴ 110
0
votes
1
reply
964
views
ChIPpeak Anno RangedData question
GO
ChIPpeakAnno
GO
ChIPpeakAnno
14.8 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.7k
views
GCRMA: feature request
GO
Regression
probe
gcrma
frma
GO
Regression
probe
gcrma
frma
updated 14.9 years ago by
Björn Usadel
▴ 250 • written 14.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
0
replies
1.1k
views
Question about design in limma
GO
GO
14.9 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
Question about design in limma
GO
GO
14.9 years ago
January Weiner
▴ 370
0
votes
0
replies
811
views
Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
GO
GO
14.9 years ago
Jenny Drnevich
★ 2.0k
0
votes
0
replies
1.2k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation
GO
probe
affy
convert
Annotation
GO
probe
affy
convert
14.9 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.5k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation
GO
probe
annotate
convert
Annotation
GO
probe
annotate
convert
updated 14.9 years ago by
Paul Geeleher
★ 1.3k • written 14.9 years ago by
Budhayash Gautam
▴ 90
0
votes
3
replies
1.4k
views
RE : RE : RE : maping SNPs
GO
TranscriptDb
GO
TranscriptDb
updated 14.9 years ago by
Hervé Pagès
16k • written 14.9 years ago by
SimonNoël
▴ 450
1,936 results • Page
17 of 39
Recent ...
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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