Showing : GO • reset
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BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.2 years ago Daniela Beißer ▴ 20
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4
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1.3k
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probeAnno for tilingArray package.
GO GO
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 30
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4
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2.0k
views
Comparing 2 GEO datasets
GO GO
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 60
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4
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2.1k
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getting gene ranges from a TranscriptDb (GenomicFeatures package)
GO TranscriptDb GO TranscriptDb
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 210
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1
reply
1.1k
views
topGO in combination with Agilent arrays
GO topGO GO topGO
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 60
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8
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2.5k
views
mouse SNPs
SNP Annotation GO HapMap annotate SNP Annotation GO HapMap annotate
15.2 years ago Glazko, Galina ▴ 350
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1.1k
views
Lumi: problems reading a GenomStudio file
GO lumi GO lumi
15.2 years ago Østensen, Ingrid Helen Garmann ▴ 10
0
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1
reply
1.9k
views
tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
15.2 years ago Noah Dowell ▴ 410
0
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4
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1.4k
views
GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation GO Cancer GOstats Annotation GO Cancer GOstats
updated 15.2 years ago by ▴ 280 • written 15.2 years ago by ★ 13k
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2
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1.3k
views
BioMart error
GO BSgenome biomaRt BSgenome GO BSgenome biomaRt BSgenome
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 80
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2
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1.2k
views
int.geneint.db package installation
GO GO
updated 15.2 years ago by ★ 2.0k • written 15.2 years ago by ★ 1.1k
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1.3k
views
Bioinformatician/Software Engineer position available at Umass Medical School
Genetics GO Cancer PROcess Genetics GO Cancer PROcess
15.2 years ago Julie Zhu ★ 4.3k
0
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4
replies
1.9k
views
Machine learning, cross validation and gene selection
GO Cancer GO Cancer
updated 15.2 years ago by 6.7k • written 15.2 years ago by ★ 1.9k
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1.1k
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Advise on analyzing NGS of many genes or intergenic peaks in many conditions
GO edgeR DESeq GO edgeR DESeq
15.2 years ago Xiaohui Wu ▴ 280
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1.5k
views
annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
15.2 years ago ifig319@ifi.csic.es ▴ 10
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0
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719
views
Creating a custom chromLocation object for cPlot
GO GO
15.3 years ago Michael Muratet ▴ 420
0
votes
1
reply
1.9k
views
topGO documentation / clarification
Microarray GO topGO Microarray GO topGO
updated 15.3 years ago by ▴ 400 • written 15.3 years ago by ▴ 60
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0
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863
views
ChIPpeakAnno:write2FASTA, getAllPeakSequence Functions
GO BSgenome BSgenome GO BSgenome BSgenome
15.3 years ago Julie Zhu ★ 4.3k
0
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3
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1.7k
views
HapMap gene list
GO HapMap GO HapMap
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ▴ 20
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2
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1.3k
views
Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ★ 1.9k
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1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription GO ChIPpeakAnno Transcription GO ChIPpeakAnno
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 410
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2
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1.1k
views
rtracklayer issues with other packages?
GO BSgenome BSgenome rtracklayer GO BSgenome BSgenome rtracklayer
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 200
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0
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1.1k
views
Error message working with ChIPpeakAnno
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
15.4 years ago Julie Zhu ★ 4.3k
0
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7
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1.9k
views
no summary of GOHyperGResult
GO GOstats Category GO GOstats Category
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 280
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1
reply
1.3k
views
Problems with arrayQualityMetrics
Microarray Genetics GO arrayQualityMetrics Microarray Genetics GO arrayQualityMetrics
updated 15.4 years ago by ▴ 110 • written 15.4 years ago by ▴ 150
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2
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1.4k
views
GO term enrichment
Microarray GO probe biomaRt Microarray GO probe biomaRt
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ★ 1.5k
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2
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2.0k
views
How to make my own GO.db?
GO goProfiles GO goProfiles
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 280
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1
reply
1.7k
views
How to cluster genes based on their GO term in Arabidopsis?
GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 280
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751
views
get BP GOterm from geneID
GO PROcess GO PROcess
15.4 years ago Yuan Jian ▴ 250
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3
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1.9k
views
identical output plots for NUSE AND RLE
GO Cancer affyPLM GO Cancer affyPLM
updated 15.4 years ago by ▴ 320 • written 15.4 years ago by ★ 2.0k
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2
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2.0k
views
hyperGTest(paramsGO)
Annotation GO Annotation GO
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 250
0
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13
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4.3k
views
DESeq and number of replicates required for RNA-Seq
GO DESeq GO DESeq
updated 15.4 years ago by ★ 6.0k • written 15.4 years ago by ★ 3.4k
0
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1
reply
1.0k
views
Question on makeVennDiagram function in ChIPpeakAnno
GO BSgenome BSgenome GO BSgenome BSgenome
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 410
0
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8
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2.3k
views
oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by ▴ 280
0
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1
reply
845
views
no array platform for GOstats
GO GO
updated 15.5 years ago by ★ 2.0k • written 15.5 years ago by ▴ 250
0
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9
replies
2.7k
views
Extract genes for a GO term in GOstat
GO GO
updated 15.5 years ago by ▴ 580 • written 15.5 years ago by ▴ 170
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0
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838
views
mclustersim function
GO Clustering limma GO Clustering limma
15.5 years ago Guido Leoni ▴ 200
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0
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1.5k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.5 years ago Marc Carlson ★ 7.2k
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0
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822
views
mogene10stv1 annotation problem
Annotation GO cdf probe Annotation GO cdf probe
15.5 years ago James W. MacDonald 68k
0
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1
reply
994
views
What to do with this data? Question on deconfouding and GO analysis
Microarray Pathways GO Microarray Pathways GO
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 370
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7
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1.9k
views
ChIPpeakAnno annotatePeakInBatch error message
GO AnnotationData GO AnnotationData
15.5 years ago Dario Strbenac ★ 1.6k
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1.3k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.5 years ago Julian Lee ▴ 10
0
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0
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1.3k
views
SPIA package problem
Microarray GO Cancer Organism hgu95av2 mgug4122a SPIA Microarray GO Cancer Organism
15.5 years ago January Weiner ▴ 370
0
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0
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1.2k
views
flowCore and curvHDR
GO flowCore GO flowCore
15.5 years ago Albert Park ▴ 10
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3
replies
1.4k
views
Saving/loading Genominator ExpData-class object
GO Genominator GO Genominator
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ▴ 500
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4
replies
2.6k
views
Mapping NCBI accession numbers to GO terms
GO GOstats GO GOstats
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 370
0
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8
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1.8k
views
AnnotationDbi quesion please help
GO GO
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 340
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3
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1.8k
views
help with annaffy package
GO annaffy GO annaffy
15.5 years ago Taylor, Katie ▴ 90
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1
reply
1.1k
views
GOstats/Category hyperGTest gene universe problem
Annotation Pathways GO Annotation Pathways GO
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 610
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votes
0
replies
605
views
Perform merge analysis
GO GO
15.5 years ago sneha patil ▴ 220
1,936 results • Page 19 of 39
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
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The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
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The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
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