Showing : GO • reset
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1.4k
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GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 460
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2
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1.6k
views
remapping the SNPs in the Affy6.0
SNP Annotation GO affy SNP Annotation GO affy
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 90
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2
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Manipulating large DNAStringSet(s)
GO Cancer BSgenome BSgenome GO Cancer BSgenome BSgenome
updated 15.6 years ago by 16k • written 15.6 years ago by ★ 13k
0
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1
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1.5k
views
annaffy-like HTML autput for org.Hs.eg.db and similar metadata packages
Microarray Annotation GO annaffy Microarray Annotation GO annaffy
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 40
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8
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3.1k
views
Alignment viewer?
GO GO
updated 15.6 years ago by ★ 1.7k • written 15.6 years ago by ▴ 210
0
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0
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687
views
I: visualization of Loess smoothing curve
GO Visualization affy GO Visualization affy
15.6 years ago Erika Melissari ▴ 20
0
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1.3k
views
R: visualization of Loess smoothing curve
GO Visualization affy GO Visualization affy
15.6 years ago James W. MacDonald 68k
0
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0
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2.1k
views
How to normalize Illumina bead-level data ?
SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP
15.6 years ago Jonas Mandel ▴ 10
0
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3
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1.3k
views
ShortRead Per Cycle Score
GO cycle GO cycle
updated 15.6 years ago by 25k • written 15.6 years ago by ★ 1.6k
0
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0
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1.2k
views
topGO:what is the good way to work out FDR?
GO topGO GO topGO
15.6 years ago jiayu wen ▴ 60
0
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1
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634
views
about GO stats
GO GO
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 130
0
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2
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1.7k
views
GOstats and htmlReport
GO GOstats GO GOstats
updated 15.6 years ago by ★ 7.4k • written 15.6 years ago by ★ 1.0k
0
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1
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1.5k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO vsn plier GO vsn plier
updated 15.6 years ago by ▴ 230 • written 15.6 years ago by ▴ 830
0
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1
reply
4.4k
views
edgeR: common vs tagwise dispersion
GO edgeR GO edgeR
15.6 years ago Gordon Smyth 53k
0
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4
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1.7k
views
Reg: GSEA
GO limma GO limma
updated 15.6 years ago by ▴ 400 • written 15.6 years ago by ▴ 170
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0
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778
views
Affymetrix differential genes
GO GO
15.6 years ago santana sarma ▴ 80
0
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0
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1.3k
views
[A question on goseq package with UCSC known gene ID]
GO goseq GO goseq
15.6 years ago sunghee OH ▴ 50
0
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8
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2.2k
views
Error GO.db package "term is not member of any ontology"
GO GO
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 340
0
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958
views
p values of time serie data with timecourse package?
Microarray GO Microarray GO
15.6 years ago Helen Zhou ▴ 150
0
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6
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3.4k
views
Error in GO.db
GO GO
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 510
0
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5
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1.8k
views
Imitating Affy's own steps
Microarray Normalization GO Preprocessing gcrma Microarray Normalization GO Preprocessing
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 120
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2
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1.4k
views
simple functional analysis of gene lists
Transcription GO convert Transcription GO convert
updated 15.7 years ago by ▴ 190 • written 15.7 years ago by ▴ 60
0
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1
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1.3k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.7 years ago by ▴ 610 • written 15.7 years ago by ▴ 190
0
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2
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3.1k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
15.7 years ago Julie Zhu ★ 4.3k
0
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2
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914
views
GO.db and org.XX.eg.db: update frequency?
Annotation GO Annotation GO
updated 15.7 years ago by 25k • written 15.7 years ago by ★ 4.3k
0
votes
10
replies
2.7k
views
microRNA: which genes code for a specific mirna?
miRNA GO microRNA miRNA GO microRNA
updated 15.7 years ago by ▴ 830 • written 15.7 years ago by ★ 1.1k
0
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1
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1.1k
views
multicore package and AnnotationDbi
GO rat2302 AnnotationDbi GO rat2302 AnnotationDbi
updated 15.7 years ago by 6.7k • written 15.7 years ago by ▴ 10
0
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3
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1.5k
views
Reg: normalization of ArrayExpress data
Microarray Normalization GO ArrayExpress Microarray Normalization GO ArrayExpress
15.7 years ago Rohit Farmer ▴ 170
0
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1
reply
828
views
can't use weights in single channel analysis?
Normalization GO Normalization GO
updated 15.7 years ago by 53k • written 15.7 years ago by ★ 2.0k
0
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7
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2.0k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
updated 15.7 years ago by ▴ 310 • written 15.7 years ago by ★ 4.3k
0
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0
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1.4k
views
Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
15.7 years ago Rhoda Kinsella ▴ 660
0
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0
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842
views
A question about org.Hs.egMAPCOUNTS
GO Cancer GO Cancer
15.7 years ago Hervé Pagès 16k
0
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3
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3.0k
views
trouble using help() after loading IRanges and [tcl] grab failed and possible tcltk problem
GO IRanges GO IRanges
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 350
0
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0
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1.5k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
15.7 years ago Dick Beyer ★ 1.4k
0
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2
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1.7k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.4k
0
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14
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2.2k
views
GO's to gene's
GO GO
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ★ 1.0k
0
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5
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1.5k
views
Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
updated 15.7 years ago by ▴ 570 • written 15.7 years ago by ▴ 400
0
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0
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912
views
Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
15.7 years ago Tony Chiang ▴ 570
0
votes
2
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989
views
missing example data from cghMCR package
GO GO
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 140
0
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8
replies
2.4k
views
GO terms
GO GOstats GO GOstats
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 330
0
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0
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1.2k
views
Comparing gene set enrichment lists / GO terms
Microarray GO PROcess Microarray GO PROcess
15.8 years ago michael watson IAH-C ★ 3.4k
0
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6
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2.3k
views
Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 15.8 years ago by ★ 3.6k • written 15.8 years ago by ★ 1.9k
0
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1
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1.1k
views
using the hyperGTest function for E. coli genes
Annotation GO Annotation GO
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 190
0
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1
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1.3k
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.8 years ago by 21k • written 15.8 years ago by ★ 1.1k
0
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0
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1.4k
views
stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
15.8 years ago Robert Castelo ★ 3.4k
0
votes
1
reply
1.9k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.8 years ago by ★ 13k • written 15.8 years ago by 21k
0
votes
0
replies
861
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
15.8 years ago Suyog Pol ▴ 40
0
votes
2
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1.0k
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO ChipName probe genefilter Annotation GO ChipName probe genefilter
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 40
0
votes
0
replies
813
views
[Fwd: Re: [R] Suppress output from getGEO]
GO GO
15.8 years ago Craig P. Pyrame ▴ 40
0
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1
reply
1.5k
views
Question regarding Installation of annotation package which was built using SQLforge
Annotation GO ChipName probe PROcess Annotation GO ChipName probe PROcess
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 40
1,936 results • Page 20 of 39
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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