Showing : GO • reset
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959
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GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ★ 2.0k
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3
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1.7k
views
WARNING: difference in sorting order depending on computer platform?!?
GO probe GO probe
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ★ 2.0k
0
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1
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1.9k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 15.8 years ago by ★ 2.9k • written 15.8 years ago by ★ 1.1k
0
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2
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1.6k
views
GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 15.8 years ago by ▴ 170 • written 15.8 years ago by ▴ 10
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1
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1.3k
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 15.8 years ago by ▴ 610 • written 15.8 years ago by ★ 2.0k
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0
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986
views
exonmap unexpected results?
Annotation GO Cancer Annotation GO Cancer
15.8 years ago Paul Leo ▴ 970
0
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6
replies
3.0k
views
lumiR error
Microarray GO Microarray GO
updated 15.9 years ago by ★ 1.2k • written 15.9 years ago by ▴ 70
0
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0
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861
views
limma: Help with time course experiment, common ref design
GO limma GO limma
15.9 years ago n.taris@voila.fr ▴ 10
0
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0
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1.3k
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
15.9 years ago Md.Mamunur Rashid ▴ 260
0
votes
3
replies
1.7k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ★ 3.4k
0
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0
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1.0k
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Bioconductor Digest, Vol 83, Issue 4
GO biomaRt Category GO biomaRt Category
15.9 years ago Lavinia Gordon ▴ 480
0
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0
replies
996
views
Fwd: Limma - replicate Fold change values - rank product analysis
GO limma GO limma
15.9 years ago Neel Aluru ▴ 460
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0
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1.0k
views
TilingFeatureSet
GO pdInfoBuilder GO pdInfoBuilder
15.9 years ago Diego Martinez ▴ 10
0
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0
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1.3k
views
Fwd: [R] Question to use R plot GO pie chart
GO Cancer Category GO Cancer Category
15.9 years ago Waverley @ Palo Alto ▴ 10
0
votes
2
replies
1.1k
views
Probeid to GOTerms... from AnnotationDBI?
GO convert AnnotationDbi GO convert AnnotationDbi
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ★ 1.1k
0
votes
6
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2.0k
views
biomaRt queries: optimal size?
GO biomaRt GO biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.9k
0
votes
2
replies
2.0k
views
GO enrichment analysis in multiple groups
GO GO
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 10
0
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1
reply
1.0k
views
HuGene transcript expression workflow -
Annotation GO limma oligo Annotation GO limma oligo
updated 15.9 years ago by ★ 4.3k • written 15.9 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Fixing brainarray repository link for mac os x
Annotation GO CustomCDF cdf gcrma Annotation GO CustomCDF cdf gcrma
updated 15.9 years ago by 68k • written 16.0 years ago by ▴ 80
0
votes
0
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946
views
[Bioc-devel] BSgenome error
GO BSgenome BSgenome IRanges ChIPpeakAnno GO BSgenome BSgenome IRanges ChIPpeakAnno
16.0 years ago Tony Chiang ▴ 570
0
votes
1
reply
1.7k
views
tryCatch: go on executing after a warning message
GO GO
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 840
0
votes
1
reply
2.1k
views
installing xcms package for R 64-bit
GO Cancer cdf xcms GO Cancer cdf xcms
updated 16.0 years ago by ▴ 10 • written 16.0 years ago by ▴ 40
0
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0
replies
1.1k
views
choosing explanatory variables for linear model in limma
GO limma PROcess GO limma PROcess
16.0 years ago Yannick Wurm ▴ 220
0
votes
3
replies
1.7k
views
Hypergeometric Testing questions
GO GOstats Category GO GOstats Category
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ▴ 840
0
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0
replies
1.1k
views
lambda and other questions related to siggenes
GO hgu133a siggenes GO hgu133a siggenes
16.0 years ago John Lande ▴ 280
0
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3
replies
1.9k
views
RpsiXML issues with latest Biogrid release files
GO Organism Arabidopsis thaliana graph RpsiXML GO Organism Arabidopsis thaliana graph
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ▴ 60
0
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1
reply
1.3k
views
org.Hs.eg "gene_info" table seems to be worng
GO GO
updated 16.0 years ago by ★ 7.2k • written 16.0 years ago by ▴ 130
0
votes
2
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1.6k
views
probe to entrezID mapping with aafLocusLink
GO hgu133plus2 probe annaffy convert GO hgu133plus2 probe annaffy convert
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 10
0
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0
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1.6k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
16.0 years ago Massimo Pinto ▴ 390
0
votes
1
reply
2.2k
views
Registration Confirmation
GO GO
updated 3.6 years ago by • 0 • written 16.0 years ago by ▴ 10
0
votes
1
reply
2.0k
views
getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
16.0 years ago Khademul Islam ▴ 30
0
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1
reply
1.3k
views
[Bioc-sig-seq] extract id from ShortRead
GO GO
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 160
0
votes
1
reply
1.8k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 30
0
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0
replies
786
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO PROcess GOstats GO PROcess GOstats
16.0 years ago James W. MacDonald 68k
0
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0
replies
994
views
ChIppeakAnno
GO BSgenome BSgenome GO BSgenome BSgenome
16.0 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.4k
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO GO
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 390
0
votes
1
reply
4.4k
views
rowttests() function in genefilter library
GO GO
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ★ 1.3k
0
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2
replies
1.8k
views
exon and transcription start site locations
Transcription GO Transcription GO
updated 16.0 years ago by ▴ 620 • written 16.0 years ago by ▴ 180
0
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0
replies
571
views
Spacious villa offering panoramic view
GO GO
16.0 years ago البيوت الجميلة ▴ 10
0
votes
2
replies
982
views
xps - hugene 1.0 st quality assessment?
GO Cancer GO Cancer
16.0 years ago Tokuyasu, Taku ▴ 20
0
votes
1
reply
1.5k
views
question about ontoCompare() performance change
Annotation GO probe Annotation GO probe
updated 16.0 years ago by ▴ 50 • written 16.0 years ago by ★ 7.4k
0
votes
0
replies
742
views
small bug in overview function of made4
GO Clustering GO Clustering
16.0 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
1.6k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 840
0
votes
1
reply
934
views
Fitting arrayweights in linear model
Normalization GO Normalization GO
updated 16.1 years ago by ★ 3.6k • written 16.1 years ago by ▴ 260
0
votes
2
replies
1.6k
views
goTools package, ontoCompare error
Microarray GO hgu133a Microarray GO hgu133a
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Adding Batch Factor in linear model...
Normalization GO Normalization GO
16.1 years ago Md.Mamunur Rashid ▴ 260
0
votes
1
reply
1.8k
views
FW: function error for "hyperGTest" in Category package
Annotation GO hgu133a probe GOstats Category Annotation GO hgu133a probe GOstats
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 60
0
votes
1
reply
1.4k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 16.1 years ago by ★ 7.4k • written 16.1 years ago by ▴ 50
0
votes
1
reply
1.5k
views
Array express looking in wrong place for file...
GO GO
updated 16.1 years ago by ▴ 280 • written 16.1 years ago by ★ 1.3k
1,936 results • Page 21 of 39
Recent ...
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Answer: Feedback needed on new user-friendly BED file tool by Kevin Blighe ★ 4.0k
Unsure, James, let me try to answer I use BED files frequently in my bioinformatics work, primarily through command-line tools like BEDT…
Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k
The output you observe from the SigDF object is normal and corresponds to the methylated and unmethylated intensities, separated by color c…
Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
You can achieve this by first extracting the codons from each sequence in the DNAStringSet and then counting their frequencies at each codo…
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Your error arises from insufficient memory allocation on your system. A distance matrix for 50,000 sequences requires substantial RAM. For …
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The error that you are encountering with DESeq2 indicates that your design matrix is singular, which occurs when the number of samples equa…
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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