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GO
•
reset
0
votes
5
replies
1.6k
views
reducing RangedData
GO
GO
16.1 years ago
Robert Castelo
★ 3.4k
0
votes
11
replies
3.8k
views
Very low P-values in limma
miRNA
Microarray
Normalization
GO
vsn
limma
microRNA
miRNA
Microarray
Normalization
GO
updated 16.1 years ago by
Paul Geeleher
★ 1.3k • written 16.1 years ago by
Gordon Smyth
53k
0
votes
0
replies
2.2k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
16.1 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.4k
views
From DE genes to enriched TF binding sites?
GO
biomaRt
GO
biomaRt
16.1 years ago
An De Bondt
▴ 40
0
votes
0
replies
565
views
H1N1 Swine Flu + H5N1 Avian Flu Conference & Exhibit November 12-13, 2009 Las Vegas, Nevada
GO
GO
16.1 years ago
Alicia Sommers
▴ 10
0
votes
2
replies
9.8k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO
hgug4112a
GO
hgug4112a
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Massimo Pinto
▴ 390
0
votes
1
reply
934
views
GSEA
GO
probe
GO
probe
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Nikolaus Schantz
▴ 10
0
votes
2
replies
1.6k
views
biomaRt query
GO
hgu133a
GO
hgu133a
updated 16.1 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 16.1 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
1.2k
views
Extract top-ranked genes from model fit
Annotation
GO
hgu133a
Annotation
GO
hgu133a
updated 16.1 years ago by
James W. MacDonald
68k • written 16.1 years ago by
Chintanu
▴ 310
0
votes
0
replies
1.1k
views
flowCore: inverse logicle transformation of flow cytometry data
GO
Cancer
flowCore
GO
Cancer
flowCore
16.1 years ago
Nishant Gopalakrishnan
▴ 340
0
votes
1
reply
1.2k
views
flowCore: inverse logicle transformation of flow cytometry data
GO
Cancer
flowCore
GO
Cancer
flowCore
updated 16.1 years ago by
spyne@broadinstitute.org
▴ 50 • written 16.1 years ago by
Nishant Gopalakrishnan
▴ 340
0
votes
1
reply
1.2k
views
Searching miRNA probe ids and annotating probe id lists
miRNA
GO
cdf
probe
affy
RankProd
miRNA
GO
cdf
probe
affy
RankProd
updated 16.1 years ago by
Sean Davis
21k • written 16.1 years ago by
Michael Black
▴ 10
0
votes
0
replies
941
views
bug? universeMappedCount for KEGGHyperG tests in GOstats
GO
GO
16.1 years ago
Cei Abreu-Goodger
▴ 830
0
votes
2
replies
1.3k
views
annotation for illumina mouse-6 arrays? & GOstats
Annotation
GO
GOstats
Annotation
GO
GOstats
updated 16.1 years ago by
Mark Dunning
★ 1.1k • written 16.2 years ago by
Yupu Liang
▴ 50
0
votes
0
replies
1.3k
views
Ensembl mart release 56: Useful information
GO
Anopheles gambiae
Drosophila melanogaster
genomes
GO
Anopheles gambiae
genomes
16.2 years ago
Rhoda Kinsella
▴ 660
0
votes
0
replies
1.1k
views
only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO
mouse4302
cdf
affy
GO
mouse4302
cdf
affy
16.2 years ago
Jarek Bryk
▴ 110
0
votes
10
replies
2.9k
views
Retrieve Entrez IDs for enriched GO terms
Microarray
Annotation
GO
limma
GOstats
biomaRt
Microarray
Annotation
GO
limma
GOstats
updated 16.2 years ago by
Heidi Dvinge
★ 2.0k • written 16.2 years ago by
Yuan Hao
▴ 90
0
votes
4
replies
1.5k
views
AnnotationDBI
Annotation
GO
AnnotationDbi
Annotation
GO
AnnotationDbi
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Denise Mauldin
▴ 50
0
votes
4
replies
2.2k
views
Gene Ontology analysis for non-affy data
GO
GOstats
topGO
GO
GOstats
topGO
updated 16.2 years ago by
Adrian Alexa
▴ 400 • written 16.2 years ago by
Yupu Liang
▴ 50
4
votes
2
replies
3.2k
views
error with display of significant nodes using topGO
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
updated 16.2 years ago by
Adrian Alexa
▴ 400 • written 16.2 years ago by
Kishor Tappita
▴ 340
0
votes
2
replies
2.8k
views
annotation and GO for non-model organism
Microarray
Annotation
GO
Organism
Microarray
Annotation
GO
Organism
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Ingunn Berget
▴ 150
0
votes
2
replies
1.3k
views
error with "retrain" method of gene2pathway package
Pathways
GO
Organism
Homo sapiens
hgu133plus2
gene2pathway
Pathways
GO
Organism
updated 16.2 years ago by
James W. MacDonald
68k • written 16.2 years ago by
Kishor Tappita
▴ 340
0
votes
1
reply
1.6k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Gang Chen
▴ 20
0
votes
0
replies
1.3k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
16.2 years ago
Johannes Hanson
▴ 30
0
votes
2
replies
1.5k
views
GO.db and Gostats question
Annotation
GO
PROcess
GOstats
Annotation
GO
PROcess
GOstats
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Tarca, Adi
▴ 570
0
votes
3
replies
1.5k
views
EBImage package loading error due to configuration of gtk
GO
EBImage
GO
EBImage
updated 16.2 years ago by
Wolfgang Huber
★ 13k • written 16.2 years ago by
Patrick Zimmerman
▴ 20
0
votes
1
reply
1.1k
views
GOstats error
Annotation
GO
Annotation
GO
updated 16.2 years ago by
Al Ivens
▴ 30 • written 16.2 years ago by
Sebastien Gerega
▴ 370
0
votes
0
replies
852
views
Different gcrma output values after upgrade BioC 2.0 -> 2.4
Microarray
Normalization
GO
hgu133plus2
rgu34a
probe
gcrma
Microarray
Normalization
GO
16.2 years ago
Rullmann, J.A.C. Ton
▴ 40
0
votes
3
replies
2.5k
views
"topGOdata" object: How to supply gene scores with a predefined list of genes
GO
GO
updated 16.2 years ago by
Adrian Alexa
▴ 400 • written 16.3 years ago by
Scott Ochsner
▴ 300
0
votes
2
replies
1.2k
views
How to compare GO results
GO
topGO
GO
topGO
updated 16.3 years ago by
Alex Sanchez
▴ 90 • written 16.3 years ago by
Johannes Hanson
▴ 30
0
votes
3
replies
1.2k
views
FW: XPS crahses R session
Annotation
GO
xps
Annotation
GO
xps
updated 16.3 years ago by
Guido Hooiveld
★ 4.1k • written 16.3 years ago by
cstrato
★ 3.9k
0
votes
0
replies
1.1k
views
XPS crahses R session
Annotation
GO
xps
Annotation
GO
xps
16.3 years ago
Guido Hooiveld
★ 4.1k
0
votes
0
replies
901
views
snapCGH plotting
GO
graph
snapCGH
GO
graph
snapCGH
16.3 years ago
Boris Umylny
▴ 120
0
votes
3
replies
1.8k
views
Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Annotation
GO
hgu133a
Annotation
GO
hgu133a
updated 16.3 years ago by
Peng Yu
▴ 950 • written 16.3 years ago by
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.0k
views
GO annotations
GO
GO
updated 16.3 years ago by
Marc Carlson
★ 7.2k • written 16.3 years ago by
mauede@alice.it
▴ 870
0
votes
0
replies
3.3k
views
[Genome] "Error Unrecognized format line 1..." when using "Add Custom Tracks"
GO
GO
16.3 years ago
Peng Yu
▴ 950
0
votes
0
replies
1.0k
views
question about ontoCompare() performance change
GO
PROcess
goTools
GO
PROcess
goTools
16.3 years ago
Oana VIGY
▴ 80
0
votes
2
replies
958
views
GO.db query error?
GO
GO
updated 16.3 years ago by
Marc Carlson
★ 7.2k • written 16.3 years ago by
Tim Smith
★ 1.1k
0
votes
1
reply
1.3k
views
Bug in metaArray package
GO
hgu133a
MergeMaid
metaArray
GO
hgu133a
MergeMaid
metaArray
updated 16.3 years ago by
Martin Morgan
25k • written 16.3 years ago by
rcaloger
▴ 500
0
votes
0
replies
1.1k
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO
GUI
hgug4112a
limma
PROcess
Agi4x44PreProcess
GO
GUI
hgug4112a
limma
PROcess
16.4 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.2k
views
Error in summary(hyperGtest)
Annotation
GO
hgu133plus2
Annotation
GO
hgu133plus2
updated 16.4 years ago by
James W. MacDonald
68k • written 16.4 years ago by
Fraser Sim
▴ 270
0
votes
1
reply
963
views
RMA normalization issue
GO
GO
updated 16.4 years ago by
Hervé Pagès
16k • written 16.4 years ago by
Fuying Gao
▴ 10
0
votes
2
replies
2.4k
views
GO categories in R for A. Thaliana
GO
Arabidopsis thaliana
GO
Arabidopsis thaliana
updated 16.4 years ago by
Marc Carlson
★ 7.2k • written 16.4 years ago by
Vishal Thapar
▴ 90
1
vote
2
replies
6.2k
views
biomaRt: getting start and end locations of gene on chromosome
GO
biomaRt
GO
biomaRt
updated 16.4 years ago by
James W. MacDonald
68k • written 16.4 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
570
views
Info about GO package
GO
GO
16.4 years ago
michael watson IAH-C
★ 3.4k
0
votes
1
reply
873
views
neverending GO problems
GO
GO
updated 16.4 years ago by
michael watson IAH-C
★ 3.4k • written 16.4 years ago by
Barbara Cegielska
▴ 200
0
votes
0
replies
1.1k
views
I: Help with symbol names mapping between miRecords and BioMart
GO
Homo sapiens
biomaRt
GO
Homo sapiens
biomaRt
16.4 years ago
mauede@alice.it
▴ 870
0
votes
0
replies
620
views
[Fwd: neverending GO problems]
GO
GO
16.4 years ago
Barbara Cegielska
▴ 200
0
votes
0
replies
806
views
Fwd: Re: which package can do GSEA for no model organism
Annotation
GO
Organism
GOstats
topGO
ASSIGN
Annotation
GO
Organism
GOstats
topGO
ASSIGN
16.4 years ago
Pengcheng Yang
▴ 40
0
votes
0
replies
1.4k
views
Annotation.db: how automatically call a mapping?
Annotation
GO
moe430a
affy
limma
annaffy
affycoretools
Annotation
GO
moe430a
affy
limma
16.4 years ago
James W. MacDonald
68k
1,936 results • Page
22 of 39
Recent ...
Replies
Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R
by
Kevin Blighe
★ 4.0k
The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
Answer: ORFik: spliced 5utr regions
by
Kevin Blighe
★ 4.0k
Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
Answer: Results with PON give more variants
by
Kevin Blighe
★ 4.0k
Your observation aligns with the expected behavior of Mutect2 in tumor-only mode, where the panel of normals (PON) integrates into the vari…
Answer: Empty boxes in treemap plot rrvgo package
by
Kevin Blighe
★ 4.0k
The empty rectangles that you observe in the treemap plot generated by the `rrvgo` package occur because the underlying `treemap` package d…
Answer: CRISPRSeek Question: changing weight and gRNA.size causes error
by
Kevin Blighe
★ 4.0k
The error you encounter when setting `gRNA.size = 24` occurs because the default `weights` vector has a length of 20, which mismatches the …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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