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GOexpress
•
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0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
18 months ago
Chruut
• 0
2
votes
8
replies
1.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 19 months ago by
kevin.rue
▴ 350 • written 19 months ago by
grolo
• 0
0
votes
0
replies
456
views
GOexpress pvalue and gene sets
GOexpress
2.3 years ago
jms2520
▴ 10
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.3 years ago by
kevin.rue
▴ 350 • written 4.3 years ago by
atorson
• 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.6 years ago by
kevin.rue
▴ 350 • written 4.6 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.0k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.7 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.3k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.3 years ago
sina.zboron
• 0
9
votes
8
replies
3.9k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.2 years ago
Bogdan
▴ 670
5
votes
4
replies
1.6k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.3 years ago by
kevin.rue
▴ 350 • written 7.3 years ago by
mforde84
▴ 20
0
votes
3
replies
3.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.0 years ago by
kevin.rue
▴ 350 • written 8.0 years ago by
Darya Vanichkina
▴ 120
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.2 years ago by
kevin.rue
▴ 350 • written 8.2 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
willj
▴ 30
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
kcamnairb
▴ 10
6
votes
7
replies
3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.6 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
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Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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