Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GOstats
•
reset
0
votes
0
replies
2.6k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways
GO
Organism
GOstats
11.1 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
2.0k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways
GO
Organism
GOstats
11.1 years ago
Guest User
★ 13k
0
votes
2
replies
1.7k
views
Can my problem be addressed with Bioconductor?
Genetics
GOstats
SNPchip
topGO
Genetics
GOstats
SNPchip
topGO
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
Guest User
★ 13k
0
votes
5
replies
2.1k
views
problem with makeGOGraph function
Yeast
graph
GOstats
Yeast
graph
GOstats
updated 11.5 years ago by
James W. MacDonald
68k • written 11.5 years ago by
Guest User
★ 13k
0
votes
3
replies
3.0k
views
GOStats: summary hyperGTest, count and size
Annotation
GO
Organism
GOstats
Annotation
GO
Organism
GOstats
11.5 years ago
Christine Gläßer
▴ 60
0
votes
4
replies
3.5k
views
Identifying Processes as Upregulated or Downregulated
PROcess
GOstats
PROcess
GOstats
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Joseph Shaw
▴ 100
0
votes
7
replies
2.5k
views
Gene Ontology Annotations from Gene Names
Microarray
GO
Organism
PROcess
GOstats
Microarray
GO
Organism
PROcess
GOstats
updated 11.6 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Ontology
Annotation
GO
annotate
GOstats
Annotation
GO
annotate
GOstats
11.7 years ago
Marc Carlson
★ 7.2k
0
votes
1
reply
1.7k
views
Using GOstats with ScanArray Express Data
Organism
probe
convert
GOstats
Organism
probe
convert
GOstats
updated 11.7 years ago by
Steve Lianoglou
★ 13k • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
GOstats, query between the GO set from geneIdsByCategory and the GO set from org.Ce.egGO
GOstats
GOstats
updated 11.7 years ago by
Dan Du
▴ 210 • written 11.7 years ago by
余淼
▴ 10
0
votes
2
replies
2.3k
views
HGNC annotation for use in GOstats
Annotation
GOstats
Annotation
GOstats
updated 11.8 years ago by
James W. MacDonald
68k • written 11.8 years ago by
Boel Brynedal
▴ 200
0
votes
1
reply
2.2k
views
Installing Gostat
GOstats
GOstats
updated 12.0 years ago by
James W. MacDonald
68k • written 12.0 years ago by
Guest User
★ 13k
0
votes
1
reply
743
views
Error in extracting genes from Goterms using GOStats package
Annotation
GO
GOstats
Annotation
GO
GOstats
updated 12.2 years ago by
James W. MacDonald
68k • written 12.2 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
Error in makeOrgPackageFromNCBI
GO
OrgDb
annotate
GOstats
GO
OrgDb
annotate
GOstats
12.3 years ago
Chris Whelan
▴ 60
0
votes
6
replies
1.7k
views
serious problem with GOstats package
GO
hgu95av2
GOstats
GO
hgu95av2
GOstats
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
gregory voisin
▴ 430
0
votes
1
reply
1.4k
views
Retrieving all entrez identifiers that are annotated in KEGG pathways
GOstats
GOstats
updated 12.6 years ago by
ANIRBAN BHAR
▴ 60 • written 12.6 years ago by
James W. MacDonald
68k
0
votes
1
reply
1.6k
views
Retrieving all entrez identifiers that are annotated in KEGG pathways
GOstats
GOstats
updated 12.6 years ago by
ANIRBAN BHAR
▴ 60 • written 12.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
question about "evidence code" in data.frame from GOstats packages with unsupported model organisms (Marc Carlson)
GO
Organism
GOstats
GO
Organism
GOstats
updated 12.7 years ago by
Marc Carlson
★ 7.2k • written 12.7 years ago by
Fix Ace
▴ 100
0
votes
0
replies
2.3k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
12.7 years ago
Malcolm Cook
★ 1.6k
0
votes
12
replies
3.0k
views
new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 12.7 years ago by
Malcolm Cook
★ 1.6k • written 12.7 years ago by
Josh Kaminker
▴ 20
0
votes
3
replies
1.4k
views
GOstats different goDag size just changing the
Annotation
GO
GOstats
Annotation
GO
GOstats
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Cristobal Fresno Rodríguez
▴ 370
0
votes
2
replies
1.2k
views
Cannot construct AnnotationDb for GOStats
GO
affy
GOstats
biomaRt
GO
affy
GOstats
biomaRt
13.1 years ago
wrighth
▴ 260
0
votes
7
replies
3.0k
views
GOstats: get genes for correspond� ing enriched GO term
GO
GOstats
GO
GOstats
updated 13.2 years ago by
Yuan Hao
▴ 240 • written 13.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.0k
views
FW: Gene list annotation
Annotation
GO
annotate
limma
GOstats
topGO
Annotation
GO
annotate
limma
GOstats
topGO
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Stéphanie haaaaaaaa
▴ 10
0
votes
3
replies
1.7k
views
GOstats - internal filtering?
Annotation
GO
hgu133plus2
GOstats
Category
Annotation
GO
hgu133plus2
GOstats
Category
updated 13.5 years ago by
James W. MacDonald
68k • written 13.5 years ago by
Andrew Jaffe
▴ 120
0
votes
1
reply
1.6k
views
GO Analysis for Mouse Exon Array
Annotation
Pathways
GO
limma
GOstats
oligo
Annotation
Pathways
GO
limma
GOstats
oligo
updated 13.6 years ago by
Benilton Carvalho
★ 4.3k • written 13.6 years ago by
Dai, Hongying,
▴ 60
0
votes
0
replies
792
views
create GeneSetCollection from OBOCollection
GO
convert
GOstats
GO
convert
GOstats
13.7 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
876
views
create GeneSetCollection from OBOCollection
GO
convert
GOstats
GO
convert
GOstats
13.7 years ago
Wendy Qiao
▴ 360
0
votes
1
reply
2.0k
views
PFAM gene enrichment test using GOstats and Category
SNP
Annotation
GO
Organism
affy
GOstats
Category
SNP
Annotation
GO
Organism
affy
updated 13.7 years ago by
Davis, Wade
▴ 350 • written 13.8 years ago by
Henrik Hjarvard de Fine Licht
▴ 10
0
votes
0
replies
1.7k
views
limma - 2-color agilent microarray, GO annotation
Microarray
Annotation
GO
Organism
limma
GOstats
oligo
ASSIGN
Microarray
Annotation
GO
13.8 years ago
Gordon Smyth
53k
0
votes
1
reply
2.6k
views
PFAM gene enrichment test using GOstats and Category
Annotation
GO
Organism
GOstats
Category
Annotation
GO
Organism
GOstats
Category
updated 13.9 years ago by
Marc Carlson
★ 7.2k • written 13.9 years ago by
Henrik De Fine Licht
▴ 10
0
votes
9
replies
2.3k
views
problem with GO terms
GO
GOstats
Category
GO
GOstats
Category
updated 13.9 years ago by
James W. MacDonald
68k • written 13.9 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.4k
views
GOstats with Reactome database?
GOstats
GOstats
updated 14.1 years ago by
Martin Morgan
25k • written 14.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
1.1k
views
Are bioconductor packages designed for enrichment analysis affected by KEGG privatization ?
Pathways
GOstats
Pathways
GOstats
updated 14.2 years ago by
Marc Carlson
★ 7.2k • written 14.2 years ago by
Radhouane Aniba
▴ 240
0
votes
1
reply
1.2k
views
GOstats : KEGGHyperGParams error
GOstats
GOstats
updated 14.4 years ago by
James W. MacDonald
68k • written 14.4 years ago by
Radhouane Aniba
▴ 240
0
votes
1
reply
1.3k
views
Bioconductor Digest, Vol 98, Issue 6
Microarray
Annotation
GO
probe
GOstats
Microarray
Annotation
GO
probe
GOstats
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
UnASM Lab_bi
▴ 10
0
votes
5
replies
2.6k
views
GOstats problem with output
Annotation
GO
GOstats
Annotation
GO
GOstats
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.5k
views
GoStats and microRNA pipeline using Biomart
miRNA
Normalization
GO
Organism
GOstats
biomaRt
microRNA
miRNA
Normalization
GO
Organism
14.5 years ago
David
▴ 860
0
votes
8
replies
2.6k
views
GoStats and microRNA pipeline using Biomart
GO
GOstats
biomaRt
microRNA
GO
GOstats
biomaRt
microRNA
updated 14.5 years ago by
Iain Gallagher
▴ 930 • written 14.5 years ago by
David
▴ 860
0
votes
1
reply
1.4k
views
goseq: gene universe
GOstats
goseq
GOstats
goseq
updated 14.5 years ago by
Jenny Drnevich
★ 2.0k • written 14.5 years ago by
Naomi Altman
★ 6.0k
0
votes
8
replies
2.9k
views
foreach, doMC, and GOstats problems
GO
GOstats
GO
GOstats
updated 14.5 years ago by
Dan Tenenbaum
★ 8.2k • written 14.5 years ago by
Tarca, Adi
▴ 570
0
votes
0
replies
2.1k
views
GO with R and Bioconductor
Transcription
Annotation
GO
GOstats
biomaRt
topGO
GSEABase
goseq
Transcription
Annotation
14.6 years ago
Duke
▴ 210
0
votes
5
replies
2.8k
views
GO with R and Bioconductor
Transcription
GO
GOstats
biomaRt
topGO
goseq
Transcription
GO
GOstats
biomaRt
topGO
updated 14.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.6 years ago by
Duke
▴ 210
0
votes
1
reply
994
views
Change in URL for PFAM links in GOstats (PFAMHyperGResult)
GOstats
GOstats
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Davis, Wade
▴ 350
0
votes
1
reply
1.1k
views
Help for GOstats packages
Annotation
GOstats
Annotation
GOstats
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.9k
views
extracting topGO gene ids from result object
Annotation
GO
graph
GOstats
topGO
Annotation
GO
graph
GOstats
topGO
updated 14.7 years ago by
Paul Rigor
▴ 20 • written 14.8 years ago by
Adrian Alexa
▴ 400
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO
Cancer
BSgenome
graph
Biostrings
GOstats
BSgenome
rtracklayer
GO
Cancer
BSgenome
updated 14.8 years ago by
Michael Lawrence
★ 11k • written 14.8 years ago by
mattia pelizzola
▴ 200
0
votes
4
replies
1.4k
views
Incomplete EntrezID annotations for the Mouse 430 v2.0 probe-set
Annotation
GO
affy
GOstats
Annotation
GO
affy
GOstats
updated 14.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.9 years ago by
ANJAN PURKAYASTHA
▴ 110
0
votes
4
replies
1.4k
views
GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation
GO
Cancer
GOstats
Annotation
GO
Cancer
GOstats
updated 15.1 years ago by
Robert M. Flight
▴ 280 • written 15.1 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
2.2k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription
PROcess
GOstats
cycle
Transcription
PROcess
GOstats
cycle
15.2 years ago
zhidong yuan
▴ 10
250 results • Page
2 of 5
Recent ...
Replies
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function
by
Gordon Smyth
53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub
by
Aaron Lun
★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards
• All
Popular Question
to
shepherl
4.2k
Popular Question
to
Joseph
• 0
Popular Question
to
Gordon Smyth
53k
Popular Question
to
zhe
▴ 20
Popular Question
to
Natalia
• 0
Locations
• All
Australia,
2 minutes ago
Pittsburgh, United States,
20 minutes ago
Seattle, WA, United States,
33 minutes ago
WEHI, Melbourne, Australia,
44 minutes ago
United States,
2 hours ago
Traffic: 917 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6