Showing : GOstats • reset
0
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7
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1.9k
views
no summary of GOHyperGResult
GO GOstats Category GO GOstats Category
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 280
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4
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1.7k
views
Using Gostats on a new organism
Organism GOstats Organism GOstats
updated 15.5 years ago by ★ 3.4k • written 15.5 years ago by ▴ 370
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0
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1.1k
views
GOstats
Annotation GOstats Annotation GOstats
15.5 years ago Yuan Jian ▴ 250
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4
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2.6k
views
Mapping NCBI accession numbers to GO terms
GO GOstats GO GOstats
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 370
0
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0
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972
views
GOMiner vs GOstats
GOstats GOstats
15.6 years ago Loren Engrav ★ 1.0k
2
votes
4
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1.6k
views
GOstats minus IEA?
GOstats GOstats
updated 15.6 years ago by 6.7k • written 15.6 years ago by ★ 1.0k
0
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2
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1.7k
views
GOstats and htmlReport
GO GOstats GO GOstats
updated 15.6 years ago by ★ 7.4k • written 15.6 years ago by ★ 1.0k
0
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1
reply
832
views
Normalization question
Normalization affy GOstats Normalization affy GOstats
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 190
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8
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2.5k
views
GO terms
GO GOstats GO GOstats
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 330
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0
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693
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
Annotation probe GOstats Category Annotation probe GOstats Category
15.8 years ago Marc Carlson ★ 7.2k
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1
reply
965
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 15.9 years ago by ★ 2.0k • written 15.9 years ago by ★ 2.0k
0
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1
reply
1.3k
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 15.9 years ago by ▴ 610 • written 15.9 years ago by ★ 2.0k
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3
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1.7k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ★ 3.4k
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1
reply
1.8k
views
problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest GOstats biomaRt multtest GOstats biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 810
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3
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2.1k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ▴ 630
0
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0
replies
1.3k
views
how to get gene list after hyperGTest (Yue, Chen - BMD)
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
16.0 years ago Bucher Elmar ▴ 80
0
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2
replies
2.1k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 60
0
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1
reply
947
views
how to get gene list after hyperGTest
GOstats Category GOstats Category
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 60
0
votes
3
replies
1.7k
views
Hypergeometric Testing questions
GO GOstats Category GO GOstats Category
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ▴ 840
0
votes
0
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789
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO PROcess GOstats GO PROcess GOstats
16.0 years ago James W. MacDonald 68k
0
votes
8
replies
2.0k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
16.1 years ago Yue, Chen - BMD ▴ 60
0
votes
1
reply
1.8k
views
FW: function error for "hyperGTest" in Category package
Annotation GO hgu133a probe GOstats Category Annotation GO hgu133a probe GOstats
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 60
0
votes
2
replies
1.3k
views
annotation for illumina mouse-6 arrays? & GOstats
Annotation GO GOstats Annotation GO GOstats
updated 16.2 years ago by ★ 1.1k • written 16.2 years ago by ▴ 50
0
votes
10
replies
2.9k
views
Retrieve Entrez IDs for enriched GO terms
Microarray Annotation GO limma GOstats biomaRt Microarray Annotation GO limma GOstats
updated 16.2 years ago by ★ 2.0k • written 16.2 years ago by ▴ 90
0
votes
4
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2.2k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 16.2 years ago by ▴ 400 • written 16.2 years ago by ▴ 50
0
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2
replies
1.5k
views
GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 16.2 years ago by ★ 7.2k • written 16.3 years ago by ▴ 570
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0
replies
728
views
From a list of annotated interesting genes to a list of GO's 'interesting' Biological Processes
GOstats GOstats
16.3 years ago Massimo Pinto ▴ 390
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5
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2.0k
views
GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
GOstats GOstats
updated 16.3 years ago by ▴ 200 • written 16.3 years ago by ▴ 90
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1
reply
1.5k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 16.4 years ago by ▴ 270 • written 16.4 years ago by ▴ 300
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2
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1.5k
views
gene universe
GOstats GOstats
updated 16.4 years ago by ★ 5.5k • written 16.4 years ago by ▴ 200
0
votes
0
replies
813
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.4 years ago Pengcheng Yang ▴ 40
0
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3
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1.9k
views
question using GSEABase
GO GOstats topGO GSEABase GO GOstats topGO GSEABase
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 80
0
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0
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1.0k
views
finding GO terms that are close in the GO graph
GO GOstats GO GOstats
16.6 years ago Karin Lagesen ▴ 20
0
votes
1
reply
1.4k
views
GoStats - getting genes from categories
GO GOstats Category GO GOstats Category
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 330
0
votes
1
reply
772
views
GO.db constants and oneGOgraph
GO GOstats GO GOstats
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 20
0
votes
0
replies
1.6k
views
FDR control in conditional Hypergeometric test
Annotation GO GOstats Annotation GO GOstats
16.6 years ago Tarca, Adi ▴ 570
0
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0
replies
1.2k
views
PFAM analysis packages?
Pathways GOstats Pathways GOstats
16.6 years ago Paul Evans ▴ 180
0
votes
2
replies
1.2k
views
ChrMapHyperGParams and linearMTest in Category
Annotation GOstats Category Annotation GOstats Category
16.7 years ago Daren Tan ▴ 120
0
votes
0
replies
1.2k
views
hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
16.7 years ago Wiebke Iffert ▴ 20
0
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0
replies
998
views
GOstats Annotation Package
Microarray Annotation GO GOstats topGO AnnotationDbi Microarray Annotation GO GOstats
16.7 years ago Jörg ▴ 40
0
votes
0
replies
1.1k
views
Gostats and custom list
Annotation Pathways GO Yeast convert GOstats Category Annotation Pathways GO Yeast
16.8 years ago Iain Wallace ▴ 50
0
votes
3
replies
1.5k
views
Gostats and custom list
Annotation Yeast convert GOstats AnnotationDbi Annotation Yeast convert GOstats
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 50
0
votes
1
reply
1.6k
views
GOstats Annotation Package
Microarray Annotation GOstats topGO Microarray Annotation GOstats topGO
updated 16.8 years ago by ▴ 730 • written 16.8 years ago by ▴ 40
0
votes
2
replies
2.8k
views
How to use GOSlim with GOstats
GOstats GOstats
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 50
0
votes
3
replies
1.8k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
16.8 years ago Yolande Tra ▴ 160
0
votes
2
replies
1.5k
views
KEGG.db in GoStats with Streptomyces coelicolor
Microarray Annotation GOstats Microarray Annotation GOstats
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
GOstats and org.EcK12.eg.db
Annotation GO GOstats Annotation GO GOstats
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ★ 3.4k
0
votes
2
replies
1.7k
views
GOstats - KEGG & PFAM mappings to Entrez IDs
GOstats GOstats
updated 17.1 years ago by 21k • written 17.1 years ago by ★ 1.1k
0
votes
1
reply
1.7k
views
GOstats-compatible annotation package for Helicobacter pylori 26995
Annotation AnnBuilder GOstats topGO Annotation AnnBuilder GOstats topGO
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 70
0
votes
4
replies
2.0k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 17.2 years ago by ▴ 510 • written 17.2 years ago by ▴ 930
250 results • Page 3 of 5
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
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Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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