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News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
13 months ago
Maria Doyle
▴ 110
0
votes
2
replies
1.5k
views
DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large intragroup variability
DESeq2
Galaxy
pca
updated 2.7 years ago by
swbarnes2
★ 1.4k • written 2.7 years ago by
mbxdn1
• 0
0
votes
1
reply
1.3k
views
Controlling for sex variance in Galaxy DESeq2
DESeq2
RNASeq
Galaxy
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
István
• 0
0
votes
3
replies
2.3k
views
StringTie output as Ballgown input
ballgown
StringTie
galaxy
rnaseq
updated 3.4 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
lakshmi9c
• 0
0
votes
1
reply
805
views
deseq2 for enrichments between different subcellular fractions?
deseq2
galaxy
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
mikelirastor
• 0
1
vote
3
replies
1.8k
views
Running DESeq2 inside local Galaxy instance
deseq2
galaxy
8.6 years ago
gkuffel
▴ 10
0
votes
2
replies
1.8k
views
Data analysis in R
bioconductor
next-generation sequencing
galaxy
updated 8.9 years ago by
Lucas Schiffer
▴ 240 • written 8.9 years ago by
efraim.culfa
• 0
0
votes
4
replies
4.9k
views
Using DESeq2 inside Galaxy
rnaseq
galaxy
deseq2
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
Marcelo Pereira
▴ 70
0
votes
2
replies
1.5k
views
Inverting order of groups when using DESeq2
DESeq2
Galaxy
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
Marcelo Pereira
▴ 70
9 results • Page
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Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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