Bioconductor Galaxy

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Conference Community Galaxy GBCC2025 Bioconductor

3 months ago Maria Doyle ▴ 100

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DESeq2 Galaxy pca

updated 23 months ago by swbarnes2 ★ 1.4k • written 23 months ago by mbxdn1 • 0

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DESeq2 RNASeq Galaxy

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by István • 0

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ballgown StringTie galaxy rnaseq

updated 2.6 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by lakshmi9c • 0

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643

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deseq2 galaxy

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by mikelirastor • 0

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deseq2 galaxy

7.8 years ago gkuffel ▴ 10

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bioconductor next-generation sequencing galaxy

updated 8.1 years ago by Lucas Schiffer ▴ 240 • written 8.1 years ago by efraim.culfa • 0

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rnaseq galaxy deseq2

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by Marcelo Pereira ▴ 70

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1.4k

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DESeq2 Galaxy

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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