Showing : GeneOntology • reset
0
votes
6
replies
7.2k
views
question on GO analysis using clusterProfiler
clusterprofiler geneontology
updated 6.5 years ago by ▴ 160 • written 6.5 years ago by • 0
1
vote
3
replies
1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 65k • written 23 months ago by ▴ 60
0
votes
3
replies
1.7k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 18 months ago by 65k • written 18 months ago by • 0
1
vote
3
replies
1.4k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.3 years ago by ▴ 730 • written 3.3 years ago by • 0
0
votes
1
reply
987
views
GOSemSim bioconductor package
geneontology R go semantic similarity
updated 7.4 years ago by ★ 6.8k • written 7.4 years ago by • 0
2
votes
1
reply
929
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
1
vote
2
replies
912
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.2 years ago MOHAMMAD • 0
1
vote
4
replies
831
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
19 months ago • updated 18 months ago faiza • 0
0
votes
0
replies
540
views
Gene Ontology on Streptococcus Pneumoniae genes sets
GO GeneOntology LocusIDtogeneIDconversion
19 months ago BioinFo.X • 0
2
votes
1
reply
374
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology
updated 11 weeks ago by 42k • written 11 weeks ago by • 0
10 results • Page 1 of 1
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
Sweden, 23 minutes ago
Ireland, 25 minutes ago
United States, 39 minutes ago
Spain, 46 minutes ago
UPF, Barcelona, Spain, 48 minutes ago
Traffic: 392 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6