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GenomeInfoDbData
•
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0
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6
replies
1.5k
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GenomeInfoDbData not available for Mac
bioconductor
GenomeInfoDbData
5.8 years ago
svetlana.gorokhova
• 0
8
votes
9
replies
1.1k
views
All three of the sites where genomeinfodbdata R packages are stored appear to be down.
GenomeInfoDbData
8 months ago
15753563659
▴ 50
1
vote
4
replies
4.0k
views
GenomeInfoDb’ could not be loaded or installed
GenomeInfoDbData
3.0 years ago
ettore64
▴ 10
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.8 years ago by
jiangjing_ing
• 0 • written 6.9 years ago by
navlern
• 0
0
votes
1
reply
379
views
GenomeInfoDbData version 1.2.9
GenomeInfoDbData
updated 6 months ago by
shepherl
3.8k • written 6 months ago by
remi.trimbour
• 0
0
votes
1
reply
1.8k
views
Issue using ballgown
software error
ballgown
genomeinfodbdata
genomeinfodb
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
dualeahmed
• 0
0
votes
2
replies
977
views
Error when installing pcaExplorer
install
GenomeInfoDbData
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
lina.bird
• 0
0
votes
4
replies
1.8k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.3 years ago
ymtan
• 0
0
votes
1
reply
715
views
package ‘GenomeInfoDb’ could not be loaded
GenomeInfoDb
GenomeInfoDbData
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
exferin
• 0
0
votes
14
replies
4.1k
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
updated 19 months ago by
wshao9
• 0 • written 22 months ago by
JoseR
• 0
2
votes
10
replies
1.3k
views
can't open mghp.osn.xsede.org
GenomeInfoDbData
genomeinfodbdata
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
15753563659
▴ 50
1
vote
7
replies
4.5k
views
installation of package ‘GenomeInfoDbData’ had non-zero exit status
GenomeInfoDbData
"GenomeInfoDbData"package
updated 2.2 years ago by
Hervé Pagès
16k • written 3.5 years ago by
N.D.Hubot
• 0
0
votes
3
replies
1.6k
views
I cannot install "microbiome"
GenomeInfoDbData
microbiome
phyloseq
updated 20 months ago by
Marcel Ramos
690 • written 21 months ago by
kikiki
• 0
0
votes
0
replies
605
views
Error installing GenomeInfoDbData in order to run DESeq2
genomeinfodbdata
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
hdwhitti
• 0
1
vote
5
replies
1.3k
views
Unable to load mm10 genome for use with GenomicDistributions package
GenomeInfoDb
GenomeInfoDbData
GenomicDistributionsData
GenomicDistributions
22 months ago
rashford
• 0
15 results • Page
1 of 1
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Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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