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18 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Answer: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments? by James W. MacDonald 65k

It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.

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Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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