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Showing :
Goana
•
reset
15
votes
18
replies
5.4k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 3.9 years ago by
Gordon Smyth
53k • written 3.9 years ago by
Raito92
▴ 60
6
votes
10
replies
6.8k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 4.1 years ago by
Gordon Smyth
53k • written 6.6 years ago by
matrs
▴ 10
16
votes
6
replies
7.4k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 10.6 years ago by
Gordon Smyth
53k • written 10.6 years ago by
carl.mann
▴ 20
3
votes
6
replies
3.2k
views
Strange output from goana()
edger
goana
updated 9.0 years ago by
Gordon Smyth
53k • written 9.0 years ago by
cronanz
• 0
0
votes
2
replies
2.0k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 8.6 years ago by
Gordon Smyth
53k • written 8.8 years ago by
Jenny Drnevich
★ 2.0k
3
votes
2
replies
5.4k
views
No genes found in universe : goana error
edger
goana
gene ontology
8.4 years ago • updated 8.3 years ago
fawazfebin
▴ 60
0
votes
4
replies
3.9k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
8.3 years ago
emy_66
• 0
0
votes
3
replies
3.1k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 8.0 years ago by
Gordon Smyth
53k • written 8.1 years ago by
jfreixas
• 0
0
votes
3
replies
1.8k
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 6.4 years ago by
Gordon Smyth
53k • written 6.4 years ago by
Ahdee
▴ 60
5
votes
7
replies
4.0k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 5.9 years ago by
Gordon Smyth
53k • written 5.9 years ago by
Raito92
▴ 60
1
vote
2
replies
1.6k
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
4.5 years ago
Barista
• 0
0
votes
3
replies
985
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip
limma
goana
updated 2.2 years ago by
SamGG
▴ 360 • written 2.2 years ago by
samagbeyimodupe
• 0
4
votes
3
replies
1.9k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
jhj89
▴ 10
0
votes
4
replies
2.5k
views
need help with microarray GO enrichment using goana
goana
limma
updated 9.3 years ago by
Gordon Smyth
53k • written 9.3 years ago by
mat149
▴ 80
3
votes
4
replies
1.9k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
b.nota
▴ 370
0
votes
0
replies
4.5k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
3.9 years ago
Raito92
▴ 60
16 results • Page
1 of 1
Recent ...
Replies
Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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