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Goana
•
reset
15
votes
18
replies
3.4k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
13
votes
6
replies
6.2k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
carl.mann
▴ 20
6
votes
10
replies
5.2k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 2.3 years ago by
Gordon Smyth
50k • written 4.8 years ago by
matrs
▴ 10
5
votes
7
replies
2.2k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
Raito92
▴ 60
4
votes
3
replies
1.3k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
jhj89
▴ 10
3
votes
6
replies
2.3k
views
Strange output from goana()
edger
goana
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
cronanz
• 0
3
votes
2
replies
4.6k
views
No genes found in universe : goana error
edger
goana
gene ontology
6.6 years ago • updated 6.5 years ago
fawazfebin
▴ 60
3
votes
4
replies
1.3k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
b.nota
▴ 360
1
vote
2
replies
960
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
2.7 years ago
Barista
• 0
0
votes
3
replies
420
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip
limma
goana
updated 5 months ago by
SamGG
▴ 350 • written 5 months ago by
samagbeyimodupe
• 0
0
votes
4
replies
1.9k
views
need help with microarray GO enrichment using goana
goana
limma
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
mat149
▴ 70
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
0
votes
4
replies
3.1k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
6.5 years ago
emy_66
• 0
0
votes
3
replies
2.5k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
jfreixas
• 0
0
votes
3
replies
1.2k
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
Ahdee
▴ 50
0
votes
0
replies
3.0k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
2.1 years ago
Raito92
▴ 60
16 results • Page
1 of 1
Recent ...
Replies
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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to
Michael Love
42k
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to
Haibo Liu
• 0
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to
HS
▴ 10
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DevelopingHippo
• 0
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Robert Castelo
★ 3.3k
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