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Grange
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0
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531
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.1 years ago
mawusse.agbessi
• 0
2
votes
0
replies
783
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
597
views
Multi-sample Heatmap from GRange
GRange
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Danny
• 0
0
votes
3
replies
2.4k
views
Selecting columns form a list of grange objects
r
granges
grange
5.6 years ago
g.k
• 0
1
vote
3
replies
947
views
GRange and bam files
bioconductor
Grange
6.0 years ago
Merlin
▴ 10
0
votes
1
reply
919
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.0 years ago
g.k
• 0
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
g.k
• 0
3
votes
4
replies
5.2k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.3k
views
Extract GRanges for gene data frame
GRange
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
mdeea123
▴ 10
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.3 years ago by
Ou, Jianhong
★ 1.3k • written 8.3 years ago by
tangming2005
▴ 190
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
cidster12
• 0
4
votes
2
replies
1.2k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.4 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
I'm new here, but its better now?
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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