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Grange
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0
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.8 years ago
mawusse.agbessi
• 0
2
votes
0
replies
935
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
5.1 years ago
rmash
▴ 20
0
votes
1
reply
718
views
Multi-sample Heatmap from GRange
GRange
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
Danny
• 0
0
votes
3
replies
2.9k
views
Selecting columns form a list of grange objects
r
granges
grange
6.2 years ago
g.k
• 0
1
vote
3
replies
1.1k
views
GRange and bam files
bioconductor
Grange
6.6 years ago
Merlin
▴ 10
0
votes
1
reply
1.1k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.7 years ago
g.k
• 0
1
vote
2
replies
1.8k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
g.k
• 0
3
votes
4
replies
5.8k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.6k
views
Extract GRanges for gene data frame
GRange
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
mdeea123
▴ 10
9
votes
21
replies
12k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 8.9 years ago by
Ou, Jianhong
★ 1.3k • written 8.9 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.1k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 9.8 years ago by
Valerie Obenchain
★ 6.8k • written 9.9 years ago by
cidster12
• 0
4
votes
2
replies
1.4k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
10.0 years ago
Bogdan
▴ 670
12 results • Page
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Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Answer: sva: get a sv for RIN scores
by
Gordon Smyth
52k
Surrogate variables are not constructed from known variates, so one doesn't get surrogate variables for RIN scores. I am guessing that the …
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
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