Bioconductor InteractionSet

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2.1k

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DESeq2 multifactorialdesign interaction InteractionSet

updated 4 months ago by Michael Love 43k • written 4 months ago by Integrative • 0

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2.6k

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DEGcomparison DESeq2 InteractionSet pvalue

20 months ago paria.alipour • 0

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1.3k

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InteractionSet GInteractions

21 months ago Sarah ▴ 10

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883

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InteractionSet subsetByOverlaps GenomicInteractions

2.3 years ago Laureano Tomás-Daza ▴ 10

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1.3k

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InteractionSet BuildReport

2.8 years ago martin.grigorov ▴ 10

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1.7k

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InteractionSet

4.3 years ago noag • 0

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1.5k

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S4 Rcpp InteractionSet IRanges Rle

updated 5.4 years ago by Aaron Lun ★ 29k • written 5.4 years ago by lklei001 • 0

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1.3k

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diffHic HiC InteractionSet

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by girardot • 0

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1.7k

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genomicinteractions gviz interactionset

updated 6.9 years ago by liz.ingsimmons ▴ 140 • written 6.9 years ago by ferbecneu • 0

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1.7k

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interactionset granges

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by Vinicius Henrique da Silva ▴ 40

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1.7k

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diffhic hic interactionset contactmatrix inflate

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by hwick1 ▴ 20

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1.8k

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diffhic interactionset

9.3 years ago Vivek.b ▴ 100

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1.4k

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InteractionSet structural variants

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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