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InteractionSet
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1
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12
replies
1.9k
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How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
12 months ago • updated 11 months ago
paria.alipour
• 0
0
votes
3
replies
1.1k
views
Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet
GInteractions
13 months ago
Sarah
▴ 10
1
vote
0
replies
703
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet
subsetByOverlaps
GenomicInteractions
19 months ago
LaureTomas
▴ 10
0
votes
3
replies
1.1k
views
trying to generate an object from a virtual class ("DataFrame")
InteractionSet
BuildReport
2.1 years ago
martin.grigorov
▴ 10
0
votes
2
replies
1.4k
views
Converting a GInteractions object to a dataframe
InteractionSet
3.6 years ago
noag
• 0
0
votes
1
reply
1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
lklei001
• 0
0
votes
1
reply
1.1k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
girardot
• 0
0
votes
2
replies
1.5k
views
Visualizing 4c-seq as arc
genomicinteractions
gviz
interactionset
updated 6.2 years ago by
liz.ingsimmons
▴ 140 • written 6.2 years ago by
ferbecneu
• 0
2
votes
1
reply
1.5k
views
Error to rename seqlevels in Granges interactions
interactionset
granges
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
hwick1
▴ 20
1
vote
5
replies
1.6k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic
interactionset
8.6 years ago
Vivek.b
▴ 100
2
votes
1
reply
1.2k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet
structural variants
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
tangming2005
▴ 200
12 results • Page
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Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Hello again, Can using inSilicoMerging handle this situation?
Answer: normalizatino of dna methylation EPIC data
by
James W. MacDonald
68k
Your code doesn't show the error? Anyway, the default for `colMeans2` is useNames = TRUE, and the call to `colMeans2` in `preprocessNoob…
Answer: WGCNA
by
James W. MacDonald
68k
This support site is meant to help people with technical questions about using Bioconductor packages, rather than as a place to get analysi…
Answer: EuroBioC2023 abstract submission is open!
by
cirwin009
• 0
Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/ [Block Blast][1] This article offers a thorough and in-depth…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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