Bioconductor Logfoldchange

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 3.0 years ago by Michael Love 42k • written 5.9 years ago by emi.sch ▴ 30

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3.6k

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clustering pca deseq2 edger logfoldchange

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by g.atla ▴ 10

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3.3k

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deseq2 R logfoldchange rna-seq

4.9 years ago • updated 4.8 years ago pierre.marin • 0

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2.8k

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deseq2 interactions logfoldchange

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by rrcutler ▴ 70

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DESeq2 logfoldchange counts

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by A ▴ 40

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1.8k

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deseq2 logfoldchange interactions

updated 8.1 years ago by Michael Love 42k • written 8.1 years ago by colaneri ▴ 30

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1.6k

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deseq2 logfoldchange variancestabilizingtransformation

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by lirongrossmann ▴ 80

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1.4k

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limma logfoldchange limma design matrix paired samples affymetrix microarrays

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by svlachavas ▴ 830

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1.4k

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dexseq logfoldchange exon usage

8.5 years ago Assa Yeroslaviz ★ 1.5k

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limma logfoldchange

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by szenitha ▴ 20

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deseq2 plotMA rnaseq logfoldchange

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by ap_vc21 • 0

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857

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DESeq2 p-adjusted-value Logfoldchange

updated 2.3 years ago by Michael Love 42k • written 2.3 years ago by bjen731 ▴ 10

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deseq2 logfoldchange

updated 7.5 years ago by Michael Love 42k • written 7.5 years ago by rraadd_8 • 0

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limma arrayweights logfoldchange neqc normalization

updated 8.0 years ago by svlachavas ▴ 830 • written 8.0 years ago by merella.stefania • 0

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limma logfoldchange

updated 7.9 years ago by Gordon Smyth 50k • written 7.9 years ago by moradzadeh_k921 • 0

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outliers deseq2 logfoldchange

6.3 years ago lirongrossmann ▴ 80

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2.9k

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deseq2 logfoldchange

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by g.atla ▴ 10

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960

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noiseq logfoldchange

6.1 years ago Aurora ▴ 20

18 results • Page 1 of 1

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Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.