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MAplot
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0
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2
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1.9k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
Michael
• 0
10
votes
8
replies
3.7k
views
MA plot
MAplot
3.0 years ago
Nathalie
▴ 20
0
votes
3
replies
4.0k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
sp
• 0
1
vote
1
reply
1.2k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
evelas13
• 0
1
vote
2
replies
953
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
rbronste
▴ 60
2
votes
2
replies
3.8k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.9k
views
MA plot scattering pattern
deseq2
MAplot
7.1 years ago
avitalwasser
• 0
5
votes
8
replies
1.8k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
rbronste
▴ 60
0
votes
4
replies
1.5k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
ma619
• 0
0
votes
1
reply
2.0k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
phurbusang
• 0
2
votes
1
reply
2.8k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
rbronste
▴ 60
2
votes
4
replies
2.4k
views
DiffBind MA plot
diffbind
maplot
updated 8.0 years ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
grundelphine
• 0
1
vote
2
replies
1.7k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 8.3 years ago by
Rory Stark
★ 5.2k • written 8.3 years ago by
rbronste
▴ 60
0
votes
3
replies
3.2k
views
DESeq2 MA plot look different
deseq2
maplot
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
jshouse
▴ 10
3
votes
6
replies
2.6k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 9.4 years ago by
Gordon Smyth
53k • written 9.4 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.6k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.8 years ago
kritikamish99
▴ 10
16 results • Page
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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