Bioconductor MAplot

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1.8k

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DESeq2 MAplot

updated 2.7 years ago by ATpoint ★ 5.0k • written 2.7 years ago by Michael • 0

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3.4k

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MAplot

2.7 years ago Nathalie ▴ 20

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3.8k

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DESeq2 MAplot deseq

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by sp • 0

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1.1k

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deseq2 MAplot lfcshrink

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by evelas13 • 0

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902

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deseq2 maplot annotation

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by rbronste ▴ 60

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3.6k

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diffbind R MAplot Chipseq

updated 6.4 years ago by Rory Stark ★ 5.2k • written 6.4 years ago by melnuesch ▴ 10

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1.8k

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deseq2 MAplot

6.9 years ago avitalwasser • 0

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1.7k

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deseq2 maplot

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by rbronste ▴ 60

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1.5k

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deseq2 normalization maplot rnaseq

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by ma619 • 0

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1.9k

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MAPLOT DESEQ2 RNASEQ

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by phurbusang • 0

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2.7k

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deseq2 maplot subset

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by rbronste ▴ 60

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2.2k

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diffbind maplot

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by grundelphine • 0

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1.7k

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diffbind deseq2 maplot

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by rbronste ▴ 60

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3.1k

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deseq2 maplot

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by jshouse ▴ 10

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2.5k

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edgeR MAplot rnaseq differential gene expression

updated 9.2 years ago by Gordon Smyth 53k • written 9.2 years ago by joseph.bergenstrahle • 0

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1.5k

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MAplot rnaseq cummerbund

9.5 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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