Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MAplot
•
reset
0
votes
2
replies
1.7k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 2.5 years ago by
ATpoint
★ 4.9k • written 2.5 years ago by
Michael
• 0
10
votes
8
replies
3.3k
views
MA plot
MAplot
2.6 years ago
Nathalie
▴ 20
0
votes
3
replies
3.8k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
sp
• 0
1
vote
1
reply
1.1k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
evelas13
• 0
1
vote
2
replies
878
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
rbronste
▴ 60
2
votes
2
replies
3.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 6.2 years ago by
Rory Stark
★ 5.2k • written 6.2 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.8k
views
MA plot scattering pattern
deseq2
MAplot
6.7 years ago
avitalwasser
• 0
5
votes
8
replies
1.6k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
rbronste
▴ 60
0
votes
4
replies
1.4k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
ma619
• 0
0
votes
1
reply
1.9k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
phurbusang
• 0
2
votes
1
reply
2.6k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
rbronste
▴ 60
2
votes
4
replies
2.2k
views
DiffBind MA plot
diffbind
maplot
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
grundelphine
• 0
1
vote
2
replies
1.6k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 7.9 years ago by
Rory Stark
★ 5.2k • written 7.9 years ago by
rbronste
▴ 60
0
votes
3
replies
3.1k
views
DESeq2 MA plot look different
deseq2
maplot
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
jshouse
▴ 10
3
votes
6
replies
2.4k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 9.0 years ago by
Gordon Smyth
52k • written 9.0 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.5k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.4 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: Updated Support Site Editor
by
vs
• 0
Thanks for posting this comment, I had the same issue and was able to solve it with the ASCII clue. I am a non-native speaker of English, a…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★ 4.9k
No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
Raya
• 0
Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
James W. MacDonald
68k
>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
Denise
• 0
Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…
Votes
Comment: Updated Support Site Editor
Updated Support Site Editor
Comment: Updated Support Site Editor
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Awards
• All
Popular Question
to
Luca
• 0
Popular Question
to
shepherl
4.2k
Popular Question
to
Pablo marin-garcia
▴ 90
Popular Question
to
mb2subi
• 0
Popular Question
to
altuda
▴ 10
Locations
• All
Boston, MA,
33 minutes ago
United States,
46 minutes ago
WEHI, Melbourne, Australia,
48 minutes ago
United States,
1 hour ago
The city by the bay,
1 hour ago
Traffic: 301 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6