Bioconductor MAplot

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DESeq2 MAplot

updated 3.0 years ago by ATpoint ★ 5.0k • written 3.0 years ago by Michael • 0

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3.7k

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MAplot

3.0 years ago Nathalie ▴ 20

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4.0k

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DESeq2 MAplot deseq

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by sp • 0

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1.2k

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deseq2 MAplot lfcshrink

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by evelas13 • 0

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962

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deseq2 maplot annotation

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by rbronste ▴ 60

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3.8k

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diffbind R MAplot Chipseq

updated 6.7 years ago by Rory Stark ★ 5.2k • written 6.7 years ago by melnuesch ▴ 10

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1.9k

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deseq2 MAplot

7.2 years ago avitalwasser • 0

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1.8k

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deseq2 maplot

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by rbronste ▴ 60

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1.6k

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deseq2 normalization maplot rnaseq

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by ma619 • 0

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2.0k

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MAPLOT DESEQ2 RNASEQ

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by phurbusang • 0

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2.8k

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deseq2 maplot subset

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by rbronste ▴ 60

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2.4k

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diffbind maplot

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by grundelphine • 0

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1.8k

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diffbind deseq2 maplot

updated 8.3 years ago by Rory Stark ★ 5.2k • written 8.3 years ago by rbronste ▴ 60

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3.2k

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deseq2 maplot

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by jshouse ▴ 10

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2.7k

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edgeR MAplot rnaseq differential gene expression

updated 9.5 years ago by Gordon Smyth 53k • written 9.5 years ago by joseph.bergenstrahle • 0

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1.6k

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MAplot rnaseq cummerbund

9.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k