Bioconductor MAplot

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2.0k

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DESeq2 MAplot

updated 3.0 years ago by ATpoint ★ 5.0k • written 3.0 years ago by Michael • 0

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3.7k

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MAplot

3.0 years ago Nathalie ▴ 20

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4.0k

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DESeq2 MAplot deseq

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by sp • 0

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1.2k

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deseq2 MAplot lfcshrink

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by evelas13 • 0

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964

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deseq2 maplot annotation

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by rbronste ▴ 60

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3.9k

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diffbind R MAplot Chipseq

updated 6.7 years ago by Rory Stark ★ 5.2k • written 6.7 years ago by melnuesch ▴ 10

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1.9k

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deseq2 MAplot

7.2 years ago avitalwasser • 0

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1.8k

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deseq2 maplot

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by rbronste ▴ 60

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1.6k

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deseq2 normalization maplot rnaseq

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by ma619 • 0

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2.0k

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MAPLOT DESEQ2 RNASEQ

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by phurbusang • 0

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2.8k

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deseq2 maplot subset

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by rbronste ▴ 60

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2.4k

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diffbind maplot

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by grundelphine • 0

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1.8k

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diffbind deseq2 maplot

updated 8.3 years ago by Rory Stark ★ 5.2k • written 8.3 years ago by rbronste ▴ 60

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3.2k

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deseq2 maplot

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by jshouse ▴ 10

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2.7k

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edgeR MAplot rnaseq differential gene expression

updated 9.5 years ago by Gordon Smyth 53k • written 9.5 years ago by joseph.bergenstrahle • 0

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1.6k

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MAplot rnaseq cummerbund

9.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k