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MAplot
•
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0
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2
replies
1.8k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 2.7 years ago by
ATpoint
★ 5.0k • written 2.7 years ago by
Michael
• 0
10
votes
8
replies
3.5k
views
MA plot
MAplot
2.8 years ago
Nathalie
▴ 20
0
votes
3
replies
3.9k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
sp
• 0
1
vote
1
reply
1.1k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
evelas13
• 0
1
vote
2
replies
919
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
rbronste
▴ 60
2
votes
2
replies
3.6k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.5 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.9k
views
MA plot scattering pattern
deseq2
MAplot
7.0 years ago
avitalwasser
• 0
5
votes
8
replies
1.7k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
rbronste
▴ 60
0
votes
4
replies
1.5k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
ma619
• 0
0
votes
1
reply
1.9k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
phurbusang
• 0
2
votes
1
reply
2.7k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
rbronste
▴ 60
2
votes
4
replies
2.3k
views
DiffBind MA plot
diffbind
maplot
updated 7.8 years ago by
Rory Stark
★ 5.2k • written 7.8 years ago by
grundelphine
• 0
1
vote
2
replies
1.7k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
rbronste
▴ 60
0
votes
3
replies
3.1k
views
DESeq2 MA plot look different
deseq2
maplot
updated 8.1 years ago by
Michael Love
43k • written 8.1 years ago by
jshouse
▴ 10
3
votes
6
replies
2.5k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 9.2 years ago by
Gordon Smyth
53k • written 9.2 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.5k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.6 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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