Bioconductor MAplot

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DESeq2 MAplot

updated 2.6 years ago by ATpoint ★ 4.9k • written 2.6 years ago by Michael • 0

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3.3k

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MAplot

2.6 years ago Nathalie ▴ 20

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3.8k

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DESeq2 MAplot deseq

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by sp • 0

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deseq2 MAplot lfcshrink

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by evelas13 • 0

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884

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deseq2 maplot annotation

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by rbronste ▴ 60

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3.5k

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diffbind R MAplot Chipseq

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by melnuesch ▴ 10

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deseq2 MAplot

6.8 years ago avitalwasser • 0

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1.6k

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deseq2 maplot

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by rbronste ▴ 60

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deseq2 normalization maplot rnaseq

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by ma619 • 0

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1.9k

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MAPLOT DESEQ2 RNASEQ

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by phurbusang • 0

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2.7k

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deseq2 maplot subset

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by rbronste ▴ 60

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diffbind maplot

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by grundelphine • 0

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1.6k

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diffbind deseq2 maplot

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by rbronste ▴ 60

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deseq2 maplot

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by jshouse ▴ 10

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2.5k

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edgeR MAplot rnaseq differential gene expression

updated 9.1 years ago by Gordon Smyth 53k • written 9.1 years ago by joseph.bergenstrahle • 0

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MAplot rnaseq cummerbund

9.4 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k