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MeDIP-seq
•
reset
7
votes
9
replies
1.7k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.0 years ago
rtrivedi1
▴ 10
16
votes
9
replies
6.6k
views
Diffbind: edgeR or DESeq2 ?
diffbind
medip-seq
edger
deseq2
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 8.2 years ago by
florian.noack
▴ 60
1
vote
6
replies
1.9k
views
MEDIP: Problem with MEDIPS.createSet
medips
bsgenome
medip-seq
updated 6.2 years ago by
Lukas Chavez
▴ 570 • written 6.2 years ago by
vjain
• 0
0
votes
6
replies
1.9k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R
medips
medip-seq
7.8 years ago • updated 6.9 years ago
stb
• 0
3
votes
5
replies
1.6k
views
CNV parameter not working - MEDIPS
medips
medip-seq
error
lukas
updated 7.0 years ago by
Matthias Lienhard
▴ 240 • written 7.0 years ago by
anupriyaverma1408
• 0
4
votes
5
replies
1.3k
views
Extracting normalized counts in MEDIPS
MEDIPS
MeDIP-seq
updated 2.7 years ago by
Lukas
▴ 20 • written 4.5 years ago by
lshepard
▴ 40
1
vote
2
replies
977
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 5.5 years ago by
Lukas Chavez
▴ 570 • written 5.5 years ago by
mtefit
• 0
1
vote
1
reply
1.2k
views
Window size for MEDIPS
medips
medip-seq
peak finding
luckas
updated 7.0 years ago by
Lukas Chavez
▴ 570 • written 7.0 years ago by
anupriyaverma1408
• 0
1
vote
1
reply
1.5k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 7.8 years ago by
Lukas Chavez
▴ 570 • written 7.8 years ago by
stb
• 0
0
votes
1
reply
1.1k
views
How does the 'paired' argument works in MeDIPS 1.23.2
medips
medip-seq
R
pair-end reads
updated 7.7 years ago by
Lukas Chavez
▴ 570 • written 7.7 years ago by
stb
• 0
0
votes
1
reply
1.2k
views
Insertion size when using 'paired' in MEDIPS.createSet()
medips
R
medip-seq
pair-end reads
updated 7.5 years ago by
Lukas Chavez
▴ 570 • written 7.5 years ago by
stb
• 0
0
votes
0
replies
826
views
All fragments/sequences captured using MeDIP are methylated?
medip-seq
methylation
CpGs
5.5 years ago
saripalligautam86
▴ 10
0
votes
0
replies
772
views
Calculating short read coverage at genome wide windows for create.set- MEDIPS
medip-seq
createset
updated 5.4 years ago by
Bioconductor Community
0 • written 5.5 years ago by
oussama.badad
• 0
0
votes
0
replies
1.3k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
8.2 years ago
Vang Le
▴ 80
0
votes
0
replies
547
views
How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
15 months ago
Luomeng
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
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by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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