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MotifDB
•
reset
2
votes
6
replies
2.8k
views
Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
motifdb
JASPAR
transcription factor binding site
10.3 years ago
Lisa Hopcroft
▴ 40
0
votes
1
reply
1.7k
views
ChIPpeakAnno "examplePattern.fa" file
rGADEM
MotifDb
rGADEM
MotifDb
updated 13.0 years ago by
José Luis Lavín
▴ 80 • written 13.0 years ago by
Paul Shannon
▴ 750
2
votes
16
replies
3.8k
views
MotifDb missing some FlyFactor Motifs
Motifdb
updated 4.0 years ago by
gunjan.dikshit
• 0 • written 5.8 years ago by
snystrom
▴ 10
0
votes
1
reply
1.8k
views
problem installing biocLite, MotifDb.
motifdb
bioclite
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
mirzabiotech2000
• 0
3
votes
3
replies
2.1k
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 9.0 years ago by
Paul Shannon
▴ 470 • written 9.0 years ago by
Pengcheng Yang
▴ 60
0
votes
2
replies
2.1k
views
How to make a MotifDb object from pwm/pfm files?
motifdb
updated 8.5 years ago by
Paul Shannon
▴ 470 • written 8.5 years ago by
Yiwei Niu
▴ 20
1
vote
1
reply
1.6k
views
total number of unique transcription factors in MotifDB
motifdb
updated 8.4 years ago by
Paul Shannon
▴ 470 • written 8.4 years ago by
scotronq
• 0
0
votes
1
reply
2.2k
views
promoter prediction
Transcription
MotIV
MotifDb
Transcription
MotIV
MotifDb
updated 13.3 years ago by
Jing Huang
▴ 380 • written 13.3 years ago by
Paul Shannon
▴ 750
0
votes
5
replies
3.3k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 11.5 years ago by
Robert Stojnic
▴ 80 • written 11.5 years ago by
deepti anand
▴ 50
0
votes
1
reply
2.7k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 10.3 years ago by
Robert Stojnic
▴ 50 • written 10.3 years ago by
elliott77
• 0
2
votes
1
reply
5.2k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
vinod.acear
▴ 50
0
votes
0
replies
1.8k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
12.0 years ago
Bahar
▴ 10
1
vote
0
replies
1.7k
views
question on MotifDb package
Transcription
MotifDb
Transcription
MotifDb
12.0 years ago
Paul Shannon
▴ 470
2
votes
0
replies
2.8k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 7.1 years ago by
Bioconductor Community
0 • written 7.3 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
1.0k
views
Research questions that are answered using MotifDb
MotifDb
MotifDb
12.1 years ago
T M
▴ 10
0
votes
3
replies
2.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.3 years ago
vinod.acear
▴ 50
16 results • Page
1 of 1
Recent ...
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Answer: bcftools norm Equivalent
by
a2a2hd42aa
• 0
it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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