Bioconductor Network

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287

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Normalization DESeq2 Network RNASeqData

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by Ömür Koray • 0

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839

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Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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340

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RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network

4 months ago Luca • 0

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887

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correlation wgcna network

updated 4 months ago by janetdelvalle056 • 0 • written 17 months ago by pharamac • 0

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2.0k

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syntenet synteny Network

written 17 months ago by Alexandros • 0

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2.0k

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Network cluster WGCNA RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by chiwut.wong • 0

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531

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Bioconductor Network RNASeqData SystemsBiology

9 months ago info ▴ 10

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569

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Network syntenet Clustering coefficient

10 months ago • updated 9 months ago Alexandros • 0

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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

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Scholar to Rory Stark ★ 5.2k

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