Bioconductor Network

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syntenet synteny Network

written 17 months ago by Alexandros • 0

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575

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Network syntenet Clustering coefficient

10 months ago • updated 9 months ago Alexandros • 0

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345

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RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network

4 months ago Luca • 0

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844

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Network RCy3

updated 4 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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292

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Normalization DESeq2 Network RNASeqData

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by Ömür Koray • 0

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2.0k

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Network cluster WGCNA RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by chiwut.wong • 0

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900

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correlation wgcna network

updated 5 months ago by janetdelvalle056 • 0 • written 17 months ago by pharamac • 0

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533

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Bioconductor Network RNASeqData SystemsBiology

9 months ago info ▴ 10

8 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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