Bioconductor Output

Showing : Output • reset

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969

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output difference

2.6 years ago Jamie • 0

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2.2k

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msa decipher output prettyPrint

updated 4.4 years ago by UBod ▴ 300 • written 4.5 years ago by matamunee • 0

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1.9k

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genesis output score

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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MEDIPS Output

6.8 years ago vjain • 0

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4.7k

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voomWithQualityWeights output

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by harelarik ▴ 60

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2.0k

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limma voom edgeR toptable output

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by heikki.sarin ▴ 10

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4.0k

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msa alignement output sorted

8.1 years ago Olorin ▴ 50

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1.6k

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cytofkit cytof write.csv output

updated 8.3 years ago by chen_hao ▴ 30 • written 8.3 years ago by cjackson13 • 0

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6.8k

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deseq2 gene columns output

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by amyfm ▴ 10

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k