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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
3.4 years ago
Jamie
• 0
0
votes
3
replies
2.5k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 5.2 years ago by
UBod
▴ 300 • written 5.2 years ago by
matamunee
• 0
3
votes
6
replies
2.2k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 6.1 years ago by
Stephanie M. Gogarten
▴ 890 • written 6.1 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.8k
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MEDIPS - Annotation output explanation
MEDIPS
Output
7.6 years ago
vjain
• 0
2
votes
8
replies
5.1k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 8.0 years ago by
Gordon Smyth
53k • written 8.0 years ago by
harelarik
▴ 60
1
vote
1
reply
2.3k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
4.6k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
8.8 years ago
Olorin
▴ 50
2
votes
2
replies
1.7k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 9.0 years ago by
chen_hao
▴ 30 • written 9.0 years ago by
cjackson13
• 0
0
votes
5
replies
7.3k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 10.0 years ago by
Michael Love
43k • written 10.0 years ago by
amyfm
▴ 10
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Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
Stephen Piccolo
▴ 600
Thank you!
Answer: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
Guido Hooiveld
★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbni.…
Comment: Getting a large intercept with DESeq2
by
Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo
by
shepherl
4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer
by
shepherl
4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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