Bioconductor Output

Showing : Output • reset

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1.3k

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output difference

3.4 years ago Jamie • 0

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2.5k

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msa decipher output prettyPrint

updated 5.2 years ago by UBod ▴ 300 • written 5.3 years ago by matamunee • 0

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genesis output score

updated 6.2 years ago by Stephanie M. Gogarten ▴ 890 • written 6.2 years ago by lassana.a.samarakoon ▴ 10

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MEDIPS Output

7.6 years ago vjain • 0

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voomWithQualityWeights output

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by harelarik ▴ 60

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limma voom edgeR toptable output

updated 8.4 years ago by Aaron Lun ★ 29k • written 8.4 years ago by heikki.sarin ▴ 10

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msa alignement output sorted

8.9 years ago Olorin ▴ 50

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cytofkit cytof write.csv output

updated 9.1 years ago by chen_hao ▴ 30 • written 9.1 years ago by cjackson13 • 0

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deseq2 gene columns output

updated 10.1 years ago by Michael Love 43k • written 10.1 years ago by amyfm ▴ 10

9 results • Page 1 of 1

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Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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