Bioconductor Output

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1.2k

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output difference

3.2 years ago Jamie • 0

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2.4k

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msa decipher output prettyPrint

updated 5.0 years ago by UBod ▴ 300 • written 5.0 years ago by matamunee • 0

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2.1k

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genesis output score

updated 5.9 years ago by Stephanie M. Gogarten ▴ 890 • written 5.9 years ago by lassana.a.samarakoon ▴ 10

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MEDIPS Output

7.4 years ago vjain • 0

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voomWithQualityWeights output

updated 7.8 years ago by Gordon Smyth 53k • written 7.8 years ago by harelarik ▴ 60

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limma voom edgeR toptable output

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by heikki.sarin ▴ 10

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msa alignement output sorted

8.6 years ago Olorin ▴ 50

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1.7k

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cytofkit cytof write.csv output

updated 8.9 years ago by chen_hao ▴ 30 • written 8.9 years ago by cjackson13 • 0

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deseq2 gene columns output

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by amyfm ▴ 10

9 results • Page 1 of 1

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Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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