Showing : Output • reset
0
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2
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1.3k
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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output difference
3.5 years ago Jamie • 0
0
votes
3
replies
2.6k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 5.3 years ago by ▴ 300 • written 5.3 years ago by • 0
3
votes
6
replies
2.3k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 6.3 years ago by ▴ 890 • written 6.3 years ago by ▴ 10
0
votes
3
replies
1.9k
views
MEDIPS - Annotation output explanation
MEDIPS Output
7.7 years ago vjain • 0
2
votes
8
replies
5.2k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 8.1 years ago by 53k • written 8.1 years ago by ▴ 60
1
vote
1
reply
2.4k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 8.4 years ago by ★ 29k • written 8.4 years ago by ▴ 10
2
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9
replies
4.8k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
9.0 years ago Olorin ▴ 50
2
votes
2
replies
1.8k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit cytof write.csv output
updated 9.2 years ago by ▴ 30 • written 9.2 years ago by • 0
0
votes
5
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7.4k
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Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 10.2 years ago by 43k • written 10.2 years ago by ▴ 10
9 results • Page 1 of 1
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Answer: Incosistencies in buildSNNGraph() function by stephengriffin04 • 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2 by stephengriffin04 • 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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