Bioconductor PlotPCA

Showing : PlotPCA • reset

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459

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Rstudio plotPCA DESeq2

6 months ago yee • 0

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704

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plotMA ggplot2 plotPCA DESeq2

updated 8 months ago by Michael Love 42k • written 8 months ago by sara.jacobson • 0

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3.5k

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plotPCA PCA

updated 14 months ago by hediatnani • 0 • written 15 months ago by Yijing • 0

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DESeq2 plotPCA

updated 10 days ago by Daniele • 0 • written 2.4 years ago by synat.keam • 0

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plotpca DESeq2

2.4 years ago bjen731 ▴ 10

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.1 years ago elizabethe819 • 0

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913

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DESeq2 RNASeq plotpca

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by s1760083 • 0

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1.1k

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deseq2 biplot plotpca

updated 4.4 years ago by Michael Love 42k • written 4.4 years ago by ecg1g15 ▴ 20

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663

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deseq2 PlotPCA draw.triple.venn

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by N. Perera • 0

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654

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deseq2 plotpca

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by lirongrossmann ▴ 80

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3.2k

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.7 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

6.9 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 7.5 years ago by Federico Marini ▴ 150 • written 7.5 years ago by al-ash ▴ 50

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994

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pca plotpca

7.7 years ago marianarochadesouza • 0

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1.6k

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deseq2 plotPCA PCA rna-seq

8.1 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Votes

A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

Answer: How to do DESeq2 on Kallisto Data

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