Bioconductor PlotPCA

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789

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Rstudio plotPCA DESeq2

12 months ago • updated 11 months ago yee • 0

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plotMA ggplot2 plotPCA DESeq2

updated 13 months ago by Michael Love 42k • written 13 months ago by sara.jacobson • 0

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4.8k

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plotPCA PCA

updated 19 months ago by hediatnani • 0 • written 20 months ago by Yijing • 0

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DESeq2 plotPCA

updated 5 months ago by Daniele • 0 • written 2.8 years ago by synat.keam • 0

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plotpca DESeq2

2.9 years ago bjen731 ▴ 10

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1.6k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.5 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 3.8 years ago by Michael Love 42k • written 3.8 years ago by s1760083 • 0

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1.3k

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deseq2 biplot plotpca

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by ecg1g15 ▴ 30

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779

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deseq2 PlotPCA draw.triple.venn

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by N. Perera • 0

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752

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deseq2 plotpca

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by lirongrossmann ▴ 80

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.2 years ago • updated 7.1 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

7.3 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 7.9 years ago by Federico Marini ▴ 180 • written 7.9 years ago by al-ash ▴ 50

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pca plotpca

8.1 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

8.5 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Votes

Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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