Bioconductor PlotPCA

Showing : PlotPCA • reset

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836

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Rstudio plotPCA DESeq2

13 months ago • updated 12 months ago yee • 0

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1.1k

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plotMA ggplot2 plotPCA DESeq2

updated 14 months ago by Michael Love 43k • written 14 months ago by sara.jacobson • 0

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5.0k

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plotPCA PCA

updated 20 months ago by hediatnani • 0 • written 21 months ago by Yijing • 0

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3.1k

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DESeq2 plotPCA

updated 6 months ago by Daniele • 0 • written 2.9 years ago by synat.keam • 0

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8.6k

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plotpca DESeq2

3.0 years ago bjen731 ▴ 10

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1.7k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.6 years ago elizabethe819 • 0

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1.1k

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DESeq2 RNASeq plotpca

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by s1760083 • 0

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1.3k

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deseq2 biplot plotpca

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by ecg1g15 ▴ 30

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792

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deseq2 PlotPCA draw.triple.venn

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by N. Perera • 0

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769

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deseq2 plotpca

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by lirongrossmann ▴ 80

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3.7k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.2 years ago lirongrossmann ▴ 80

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3.4k

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DESeq2 plotPCA rlog transformation vsd

7.4 years ago Jane Merlevede ▴ 90

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46k

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plotPCA deseq2 labels

updated 8.0 years ago by Federico Marini ▴ 180 • written 8.0 years ago by al-ash ▴ 50

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pca plotpca

8.2 years ago marianarochadesouza • 0

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1.7k

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deseq2 plotPCA PCA rna-seq

8.6 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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