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Proteome
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673
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analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 2.1 years ago by
ary.lech
▴ 10
2
votes
6
replies
1.6k
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 2.3 years ago by
Hervé Pagès
16k • written 2.3 years ago by
nromerov
• 0
0
votes
1
reply
835
views
catagorization of proteins
Proteome
ProtGenerics
written 3.3 years ago by
bansalheena10
• 0
0
votes
0
replies
984
views
Outliers
Proteomics
Proteome
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
bansalheena10
• 0
0
votes
0
replies
1.2k
views
ProteoMM analysis with two replicates
shotgunproteomics
Proteome
proteomics
Proteomics
ProteoMM
3.8 years ago
ary.lech
▴ 10
1
vote
7
replies
4.3k
views
How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
4.8 years ago
tpm
• 0
1
vote
0
replies
2.1k
views
News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
5.1 years ago
info
▴ 10
0
votes
1
reply
1.5k
views
R package to change protein *.msf file to any readable file
Proteome
ProteomicsWorkflow
proteomics
updated 5.1 years ago by
swbarnes2
★ 1.4k • written 5.1 years ago by
yueli7
▴ 20
0
votes
5
replies
3.0k
views
mRNA-seq cross-species analysis, is it possible?
Genetics
Normalization
Proteome
DESeq
Genetics
Normalization
Proteome
DESeq
updated 14.4 years ago by
Davis McCarthy
▴ 20 • written 14.4 years ago by
mali salmon
▴ 370
0
votes
0
replies
1.2k
views
BSgenome data package of the human proteome: Does it exist?
Proteome
Proteome
16.2 years ago
Tillinghast, Guy, M.D.
▴ 30
0
votes
2
replies
2.1k
views
I: Two way anova or manova?
Proteome
Proteome
updated 18.4 years ago by
Mª José Nueda
▴ 90 • written 18.5 years ago by
simonegri@alice.it
▴ 20
11 results • Page
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Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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