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Proteome
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analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 23 months ago by
ary.lech
▴ 10
2
votes
6
replies
1.5k
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 2.1 years ago by
Hervé Pagès
16k • written 2.1 years ago by
nromerov
• 0
0
votes
1
reply
777
views
catagorization of proteins
Proteome
ProtGenerics
written 3.1 years ago by
bansalheena10
• 0
0
votes
0
replies
937
views
Outliers
Proteomics
Proteome
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
bansalheena10
• 0
0
votes
0
replies
1.2k
views
ProteoMM analysis with two replicates
shotgunproteomics
Proteome
proteomics
Proteomics
ProteoMM
3.6 years ago
ary.lech
▴ 10
1
vote
7
replies
4.2k
views
How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
4.6 years ago
tpm
• 0
1
vote
0
replies
2.0k
views
News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
4.9 years ago
info
▴ 10
0
votes
1
reply
1.4k
views
R package to change protein *.msf file to any readable file
Proteome
ProteomicsWorkflow
proteomics
updated 4.9 years ago by
swbarnes2
★ 1.4k • written 4.9 years ago by
yueli7
▴ 20
0
votes
5
replies
2.9k
views
mRNA-seq cross-species analysis, is it possible?
Genetics
Normalization
Proteome
DESeq
Genetics
Normalization
Proteome
DESeq
updated 14.2 years ago by
Davis McCarthy
▴ 20 • written 14.2 years ago by
mali salmon
▴ 370
0
votes
0
replies
1.1k
views
BSgenome data package of the human proteome: Does it exist?
Proteome
Proteome
16.0 years ago
Tillinghast, Guy, M.D.
▴ 30
0
votes
2
replies
2.0k
views
I: Two way anova or manova?
Proteome
Proteome
updated 18.2 years ago by
Mª José Nueda
▴ 90 • written 18.2 years ago by
simonegri@alice.it
▴ 20
11 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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