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Proteome
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analysis of overexpressed proteins in metaproteomes
Proteomics
ProteoMM
ProteomicsWorkflow
Proteome
written 14 months ago by
ary.lech
▴ 10
2
votes
6
replies
1.2k
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 16 months ago by
Hervé Pagès
16k • written 16 months ago by
nromerov
• 0
0
votes
1
reply
640
views
catagorization of proteins
Proteome
ProtGenerics
written 2.4 years ago by
bansalheena10
• 0
0
votes
0
replies
767
views
Outliers
Proteomics
Proteome
updated 2.4 years ago by
ATpoint
★ 4.6k • written 2.4 years ago by
bansalheena10
• 0
0
votes
0
replies
957
views
ProteoMM analysis with two replicates
shotgunproteomics
Proteome
proteomics
Proteomics
ProteoMM
2.9 years ago
ary.lech
▴ 10
1
vote
7
replies
3.7k
views
How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
3.9 years ago
tpm
• 0
1
vote
0
replies
1.8k
views
News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
4.2 years ago
info
▴ 10
0
votes
1
reply
1.3k
views
R package to change protein *.msf file to any readable file
Proteome
ProteomicsWorkflow
proteomics
updated 4.2 years ago by
swbarnes2
★ 1.4k • written 4.2 years ago by
yueli7
▴ 20
0
votes
5
replies
2.6k
views
mRNA-seq cross-species analysis, is it possible?
Genetics
Normalization
Proteome
DESeq
Genetics
Normalization
Proteome
DESeq
updated 13.5 years ago by
Davis McCarthy
▴ 20 • written 13.5 years ago by
mali salmon
▴ 370
0
votes
0
replies
936
views
BSgenome data package of the human proteome: Does it exist?
Proteome
Proteome
15.3 years ago
Tillinghast, Guy, M.D.
▴ 30
0
votes
2
replies
1.8k
views
I: Two way anova or manova?
Proteome
Proteome
updated 17.5 years ago by
Mª José Nueda
▴ 90 • written 17.5 years ago by
simonegri@alice.it
▴ 20
11 results • Page
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Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
• 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
by
James W. MacDonald
67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
jodan
• 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Answer: Unused arguments error without used arguments in GSVA?
by
jodan
• 0
It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…
Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals
by
Michael Love
43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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