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QSEA
•
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0
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278
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
9 months ago
User3088
• 0
0
votes
1
reply
636
views
QSEA:Error in h(simpleError(msg, call))
qsea
14 months ago
kf
• 0
1
vote
2
replies
652
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 18 months ago by
Researcher
▴ 10
0
votes
2
replies
743
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
21 months ago • updated 9 months ago
User3088
• 0
9
votes
18
replies
4.7k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 22 months ago by
Matthias Lienhard
▴ 280 • written 8.6 years ago by
justinburgener
▴ 20
2
votes
1
reply
903
views
QSEA: normalisation >> sequencing preference
qsea
updated 2.7 years ago by
Matthias Lienhard
▴ 280 • written 2.8 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.3k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 2.7 years ago by
Matthias Lienhard
▴ 280 • written 2.8 years ago by
a.riediger
▴ 20
1
vote
4
replies
1.9k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 3.2 years ago by
Simon Pearce
• 0 • written 3.2 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.3k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 3.3 years ago by
Simon Pearce
• 0 • written 3.3 years ago by
Marianna
▴ 20
3
votes
8
replies
2.1k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.4 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.6k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.5 years ago
rtrivedi1
▴ 10
0
votes
1
reply
1.0k
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 4.5 years ago by
Matthias Lienhard
▴ 280 • written 4.7 years ago by
el466
• 0
1
vote
1
reply
1.4k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.9 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
mbk0asis
• 0
0
votes
2
replies
1.2k
views
Qsea - plotCoverage
Qsea
updated 5.6 years ago by
Matthias Lienhard
▴ 280 • written 5.6 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.6k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 5.7 years ago by
Matthias Lienhard
▴ 280 • written 5.7 years ago by
Simon Pearce
• 0
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.7 years ago by
Matthias Lienhard
▴ 280 • written 5.7 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
2.2k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 10 months ago by
Lukas
▴ 20 • written 6.2 years ago by
LNathanson
• 0
0
votes
0
replies
1.5k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
7.1 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.2k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 7.4 years ago by
Matthias Lienhard
▴ 280 • written 7.5 years ago by
apt.university
• 0
0
votes
8
replies
2.2k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 7.5 years ago by
Matthias Lienhard
▴ 280 • written 7.6 years ago by
wildist
• 0
0
votes
3
replies
1.7k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 7.7 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
geekyvt
• 0
1
vote
2
replies
1.4k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.7 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
geekyvt
• 0
1
vote
3
replies
1.7k
views
QSEA Error while loading the bam files
qsea
updated 7.8 years ago by
Matthias Lienhard
▴ 280 • written 7.8 years ago by
geekyvt
• 0
23 results • Page
1 of 1
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Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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