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QSEA
•
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0
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300
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
11 months ago
User3088
• 0
0
votes
1
reply
662
views
QSEA:Error in h(simpleError(msg, call))
qsea
15 months ago
kf
• 0
1
vote
2
replies
681
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 19 months ago by
Researcher
▴ 10
0
votes
2
replies
782
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
23 months ago • updated 11 months ago
User3088
• 0
9
votes
18
replies
4.8k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 24 months ago by
Matthias Lienhard
▴ 280 • written 8.7 years ago by
justinburgener
▴ 20
2
votes
1
reply
931
views
QSEA: normalisation >> sequencing preference
qsea
updated 2.9 years ago by
Matthias Lienhard
▴ 280 • written 2.9 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.3k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 2.9 years ago by
Matthias Lienhard
▴ 280 • written 2.9 years ago by
a.riediger
▴ 20
1
vote
4
replies
1.9k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 3.3 years ago by
Simon Pearce
• 0 • written 3.3 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.4k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 3.4 years ago by
Simon Pearce
• 0 • written 3.4 years ago by
Marianna
▴ 20
3
votes
8
replies
2.2k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.5 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.7k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.6 years ago
rtrivedi1
▴ 10
0
votes
1
reply
1.1k
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 4.6 years ago by
Matthias Lienhard
▴ 280 • written 4.8 years ago by
el466
• 0
1
vote
1
reply
1.5k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 5.0 years ago by
Matthias Lienhard
▴ 280 • written 5.0 years ago by
mbk0asis
• 0
0
votes
2
replies
1.2k
views
Qsea - plotCoverage
Qsea
updated 5.7 years ago by
Matthias Lienhard
▴ 280 • written 5.7 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.6k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 5.8 years ago by
Matthias Lienhard
▴ 280 • written 5.8 years ago by
Simon Pearce
• 0
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.8 years ago by
Matthias Lienhard
▴ 280 • written 5.8 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
2.3k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 11 months ago by
Lukas
▴ 20 • written 6.4 years ago by
LNathanson
• 0
0
votes
0
replies
1.5k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
7.2 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.2k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 7.5 years ago by
Matthias Lienhard
▴ 280 • written 7.6 years ago by
apt.university
• 0
0
votes
8
replies
2.3k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 7.6 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
wildist
• 0
0
votes
3
replies
1.7k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
1
vote
2
replies
1.4k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
1
vote
3
replies
1.7k
views
QSEA Error while loading the bam files
qsea
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
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Answer: Limma-voom sample weights and impact on DEG numbers
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I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
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