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QSEA
•
reset
0
votes
1
reply
283
views
QSEA:Error in h(simpleError(msg, call))
qsea
7 weeks ago
kf
• 0
0
votes
2
replies
334
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 5 months ago by
Researcher
• 0
0
votes
1
reply
373
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 7 months ago by
Simon Pearce
• 0 • written 9 months ago by
User3088
• 0
9
votes
18
replies
3.6k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 10 months ago by
Matthias Lienhard
▴ 280 • written 7.6 years ago by
justinburgener
▴ 20
2
votes
1
reply
660
views
QSEA: normalisation >> sequencing preference
qsea
updated 20 months ago by
Matthias Lienhard
▴ 280 • written 20 months ago by
a.riediger
▴ 20
1
vote
1
reply
901
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 20 months ago by
Matthias Lienhard
▴ 280 • written 20 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.4k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 2.1 years ago by
Simon Pearce
• 0 • written 2.1 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.0k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 2.2 years ago by
Simon Pearce
• 0 • written 2.3 years ago by
Marianna
▴ 20
3
votes
8
replies
1.7k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.4 years ago
rtrivedi1
▴ 10
7
votes
9
replies
1.9k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.5 years ago • updated 3.4 years ago
rtrivedi1
▴ 10
0
votes
1
reply
792
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.5 years ago by
Matthias Lienhard
▴ 280 • written 3.6 years ago by
el466
• 0
1
vote
1
reply
1.2k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.8 years ago by
Matthias Lienhard
▴ 280 • written 3.8 years ago by
mbk0asis
• 0
0
votes
2
replies
926
views
Qsea - plotCoverage
Qsea
updated 4.6 years ago by
Matthias Lienhard
▴ 280 • written 4.6 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.2k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 4.7 years ago by
Matthias Lienhard
▴ 280 • written 4.7 years ago by
Simon Pearce
• 0
0
votes
1
reply
826
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 4.7 years ago by
Matthias Lienhard
▴ 280 • written 4.7 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.4k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 5.2 years ago by
Matthias Lienhard
▴ 280 • written 5.2 years ago by
LNathanson
• 0
0
votes
0
replies
1.2k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
6.1 years ago
saripalligautam86
▴ 10
0
votes
1
reply
968
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 6.4 years ago by
Matthias Lienhard
▴ 280 • written 6.4 years ago by
apt.university
• 0
0
votes
8
replies
1.8k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.5 years ago by
Matthias Lienhard
▴ 280 • written 6.5 years ago by
wildist
• 0
0
votes
3
replies
1.4k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 6.7 years ago by
Matthias Lienhard
▴ 280 • written 6.7 years ago by
geekyvt
• 0
1
vote
2
replies
1.2k
views
QSEA: Error while addLibraryFactors
QSEA
updated 6.7 years ago by
Matthias Lienhard
▴ 280 • written 6.7 years ago by
geekyvt
• 0
1
vote
3
replies
1.5k
views
QSEA Error while loading the bam files
qsea
updated 6.7 years ago by
Matthias Lienhard
▴ 280 • written 6.7 years ago by
geekyvt
• 0
22 results • Page
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Recent ...
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Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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