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QSEA
•
reset
0
votes
2
replies
77
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 19 hours ago by
Simon Pearce
• 0 • written 11 days ago by
Marianna
• 0
3
votes
8
replies
556
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
13 months ago
rtrivedi1
▴ 10
7
votes
9
replies
781
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
15 months ago • updated 14 months ago
rtrivedi1
▴ 10
0
votes
1
reply
286
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 15 months ago by
Matthias Lienhard
▴ 220 • written 17 months ago by
el466
• 0
0
votes
1
reply
387
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 19 months ago by
Matthias Lienhard
▴ 220 • written 19 months ago by
mbk0asis
• 0
7
votes
17
replies
1.6k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 2.0 years ago by
Matthias Lienhard
▴ 220 • written 5.4 years ago by
justinburgener
▴ 20
0
votes
2
replies
312
views
Qsea - plotCoverage
Qsea
updated 2.3 years ago by
Matthias Lienhard
▴ 220 • written 2.3 years ago by
gaurav4thareja
▴ 20
0
votes
2
replies
395
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 2.5 years ago by
Matthias Lienhard
▴ 220 • written 2.5 years ago by
Simon Pearce
• 0
0
votes
1
reply
299
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 2.5 years ago by
Matthias Lienhard
▴ 220 • written 2.5 years ago by
gaurav4thareja
▴ 20
0
votes
2
replies
482
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 3.0 years ago by
Matthias Lienhard
▴ 220 • written 3.0 years ago by
LNathanson
• 0
0
votes
0
replies
466
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
3.8 years ago
saripalligautam86
▴ 10
0
votes
1
reply
489
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 4.2 years ago by
Matthias Lienhard
▴ 220 • written 4.2 years ago by
apt.university
• 0
0
votes
8
replies
929
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 4.3 years ago by
Matthias Lienhard
▴ 220 • written 4.3 years ago by
wildist
• 0
0
votes
3
replies
675
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 4.5 years ago by
Matthias Lienhard
▴ 220 • written 4.5 years ago by
geekyvt
• 0
1
vote
2
replies
574
views
QSEA: Error while addLibraryFactors
QSEA
updated 4.5 years ago by
Matthias Lienhard
▴ 220 • written 4.5 years ago by
geekyvt
• 0
1
vote
3
replies
825
views
QSEA Error while loading the bam files
qsea
updated 4.5 years ago by
Matthias Lienhard
▴ 220 • written 4.5 years ago by
geekyvt
• 0
16 results • Page
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Recent ...
Replies
Comment: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws
by
James W. MacDonald
60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks
by
Tiago C. Silva
▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks
by
Marcel Ramos
570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Answer: error running UniProt.ws
by
Marcel Ramos
570
I've updated the package to handle these requests on both Bioc devel and release 3.15. Let me know if you have any issues. Best, M…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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Marcel Ramos
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46k
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sunnykevin97
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