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Qsea
•
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0
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replies
322
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
12 months ago
User3088
• 0
0
votes
1
reply
712
views
QSEA:Error in h(simpleError(msg, call))
qsea
17 months ago
kf
• 0
1
vote
2
replies
731
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 21 months ago by
Researcher
▴ 10
0
votes
2
replies
844
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
2.1 years ago • updated 12 months ago
User3088
• 0
9
votes
18
replies
4.9k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 2.1 years ago by
Matthias Lienhard
▴ 280 • written 8.9 years ago by
justinburgener
▴ 20
2
votes
1
reply
995
views
QSEA: normalisation >> sequencing preference
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 280 • written 3.0 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.5k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 280 • written 3.0 years ago by
a.riediger
▴ 20
1
vote
4
replies
2.0k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 3.4 years ago by
Simon Pearce
• 0 • written 3.4 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.4k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 3.5 years ago by
Simon Pearce
• 0 • written 3.6 years ago by
Marianna
▴ 20
3
votes
8
replies
2.2k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.7 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.9k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.8 years ago • updated 4.7 years ago
rtrivedi1
▴ 10
0
votes
1
reply
1.1k
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 4.8 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
el466
• 0
1
vote
1
reply
1.5k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 5.1 years ago by
Matthias Lienhard
▴ 280 • written 5.1 years ago by
mbk0asis
• 0
0
votes
2
replies
1.2k
views
Qsea - plotCoverage
Qsea
updated 5.8 years ago by
Matthias Lienhard
▴ 280 • written 5.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.7k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 6.0 years ago by
Matthias Lienhard
▴ 280 • written 6.0 years ago by
Simon Pearce
• 0
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 6.0 years ago by
Matthias Lienhard
▴ 280 • written 6.0 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
2.4k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 13 months ago by
Lukas
▴ 20 • written 6.5 years ago by
LNathanson
• 0
0
votes
0
replies
1.5k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
7.4 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.2k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 7.7 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
apt.university
• 0
0
votes
8
replies
2.3k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 7.8 years ago by
Matthias Lienhard
▴ 280 • written 7.8 years ago by
wildist
• 0
0
votes
3
replies
1.8k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
1
vote
2
replies
1.4k
views
QSEA: Error while addLibraryFactors
QSEA
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
1
vote
3
replies
1.8k
views
QSEA Error while loading the bam files
qsea
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
23 results • Page
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Replies
Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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