Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
QSEA
•
reset
0
votes
0
replies
16
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
8 hours ago
Researcher
• 0
0
votes
1
reply
186
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 8 weeks ago by
Simon Pearce
• 0 • written 3 months ago by
User3088
• 0
7
votes
18
replies
3.0k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 4 months ago by
Matthias Lienhard
▴ 240 • written 7.1 years ago by
justinburgener
▴ 20
2
votes
1
reply
509
views
QSEA: normalisation >> sequencing preference
qsea
updated 14 months ago by
Matthias Lienhard
▴ 240 • written 15 months ago by
a.riediger
▴ 20
1
vote
1
reply
635
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 14 months ago by
Matthias Lienhard
▴ 240 • written 15 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.1k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 19 months ago by
Simon Pearce
• 0 • written 20 months ago by
a.riediger
▴ 20
0
votes
2
replies
843
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 21 months ago by
Simon Pearce
• 0 • written 21 months ago by
Marianna
▴ 20
3
votes
8
replies
1.4k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
2.9 years ago
rtrivedi1
▴ 10
7
votes
9
replies
1.7k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.0 years ago
rtrivedi1
▴ 10
0
votes
1
reply
649
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 240 • written 3.2 years ago by
el466
• 0
0
votes
1
reply
857
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.4 years ago by
Matthias Lienhard
▴ 240 • written 3.4 years ago by
mbk0asis
• 0
0
votes
2
replies
772
views
Qsea - plotCoverage
Qsea
updated 4.1 years ago by
Matthias Lienhard
▴ 240 • written 4.1 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
974
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 4.2 years ago by
Matthias Lienhard
▴ 240 • written 4.2 years ago by
Simon Pearce
• 0
0
votes
1
reply
686
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 4.2 years ago by
Matthias Lienhard
▴ 240 • written 4.2 years ago by
gaurav4thareja
▴ 20
0
votes
2
replies
1.1k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 4.7 years ago by
Matthias Lienhard
▴ 240 • written 4.7 years ago by
LNathanson
• 0
0
votes
0
replies
999
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
5.6 years ago
saripalligautam86
▴ 10
0
votes
1
reply
872
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 5.9 years ago by
Matthias Lienhard
▴ 240 • written 6.0 years ago by
apt.university
• 0
0
votes
8
replies
1.6k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.0 years ago by
Matthias Lienhard
▴ 240 • written 6.0 years ago by
wildist
• 0
0
votes
3
replies
1.2k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
1
vote
2
replies
1.0k
views
QSEA: Error while addLibraryFactors
QSEA
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
1
vote
3
replies
1.3k
views
QSEA Error while loading the bam files
qsea
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.
Comment: ChAMP installation issue
by
e1271094
• 0
I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…
Comment: ChAMP installation issue
by
e1271094
• 0
I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…
Answer: Can I trust the differential expression analysis when the two groups overlap on
by
Michael Love
42k
Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …
Votes
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Awards
• All
Scholar
to
mat149
▴ 70
Popular Question
to
Gordon Smyth
50k
Popular Question
to
maria.soler
• 0
Popular Question
to
Pietro
▴ 40
Popular Question
to
neilzhao
▴ 30
Locations
• All
India,
1 minute ago
WEHI, Melbourne, Australia,
7 minutes ago
France,
16 minutes ago
UPF, Barcelona, Spain,
17 minutes ago
Sweden,
22 minutes ago
Traffic: 762 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6