Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RCy3
•
reset
1
vote
2
replies
872
views
KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
15 months ago • updated 14 months ago
Arindam
▴ 80
2
votes
2
replies
1.3k
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
19 months ago
Matthew Thornton
▴ 390
1
vote
1
reply
719
views
Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 24 months ago by
alex.pico
▴ 30 • written 2.0 years ago by
David R
▴ 90
1
vote
1
reply
1.5k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 24 months ago by
alex.pico
▴ 30 • written 2.0 years ago by
David R
▴ 90
1
vote
1
reply
1.3k
views
Cytohubba in RCY3
RCy3
Cytohubba
updated 24 months ago by
alex.pico
▴ 30 • written 2.0 years ago by
jzhan067
▴ 10
3
votes
7
replies
2.5k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
2.6 years ago
Ortega-C
▴ 10
1
vote
1
reply
1.3k
views
how to call an app from Cytoscape using R?
RCy3
updated 2.9 years ago by
alex.pico
▴ 30 • written 2.9 years ago by
adR
▴ 40
2
votes
3
replies
2.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
Caitlin
▴ 50
1
vote
2
replies
1.5k
views
RCy3 Cytoscape package question
rcy3
updated 5.0 years ago by
alex.pico
▴ 30 • written 6.0 years ago by
hanna226613
▴ 10
1
vote
3
replies
1.9k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape
Pathways
Wikipathways
rWikiPathways
RCy3
5.1 years ago • updated 5.0 years ago
Emilia
▴ 40
0
votes
1
reply
1.2k
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 5.0 years ago by
alex.pico
▴ 30 • written 5.5 years ago by
ellisjc
• 0
3
votes
4
replies
2.1k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
6.6 years ago
Matthew Thornton
▴ 390
12 results • Page
1 of 1
Recent ...
Replies
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Locations
• All
United States,
9 minutes ago
The city by the bay,
20 minutes ago
United States,
2 hours ago
United States,
3 hours ago
United States,
3 hours ago
Traffic: 1488 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6