Showing : RCy3 • reset
1
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2
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
8 weeks ago • updated 24 days ago Arindam ▴ 80
2
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2
replies
677
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
5 months ago Matthew Thornton ▴ 380
1
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1
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426
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 10 months ago by ▴ 30 • written 10 months ago by ▴ 90
1
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1
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1.1k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 10 months ago by ▴ 30 • written 10 months ago by ▴ 90
1
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1
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581
views
Cytohubba in RCY3
RCy3 Cytohubba
updated 10 months ago by ▴ 30 • written 10 months ago by ▴ 10
3
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7
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1.7k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
18 months ago Ortega-C ▴ 10
1
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1
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842
views
how to call an app from Cytoscape using R?
RCy3
updated 21 months ago by ▴ 30 • written 21 months ago by ▴ 40
2
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3
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1.6k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 3.0 years ago by ★ 13k • written 3.0 years ago by ▴ 50
1
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2
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1.0k
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RCy3 Cytoscape package question
rcy3
updated 3.9 years ago by ▴ 30 • written 4.8 years ago by ▴ 10
1
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3
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1.5k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
3.9 years ago Emilia ▴ 40
0
votes
1
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881
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.9 years ago by ▴ 30 • written 4.3 years ago by • 0
3
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4
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1.6k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.5 years ago Matthew Thornton ▴ 380
12 results • Page 1 of 1
Recent ...
Replies
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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