Showing : RCy3 • reset
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
13 months ago • updated 12 months ago Arindam ▴ 80
2
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2
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1.2k
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
18 months ago • updated 17 months ago Matthew Thornton ▴ 380
1
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1
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663
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 90
1
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1
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1.5k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 90
1
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1
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1.2k
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Cytohubba in RCY3
RCy3 Cytohubba
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 10
3
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7
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2.4k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.5 years ago Ortega-C ▴ 10
1
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1
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1.2k
views
how to call an app from Cytoscape using R?
RCy3
updated 2.8 years ago by ▴ 30 • written 2.8 years ago by ▴ 40
2
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3
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2.2k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.0 years ago by ★ 13k • written 4.0 years ago by ▴ 50
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2
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1.4k
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RCy3 Cytoscape package question
rcy3
updated 4.9 years ago by ▴ 30 • written 5.8 years ago by ▴ 10
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3
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1.9k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
4.9 years ago Emilia ▴ 40
0
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1
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1.1k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.9 years ago by ▴ 30 • written 5.3 years ago by • 0
3
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4
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2.0k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.5 years ago Matthew Thornton ▴ 380
12 results • Page 1 of 1
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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