Bioconductor RCy3

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igraph KEGGgraph RCy3 GraphNEL

6 months ago • updated 5 months ago Arindam ▴ 80

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912

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RCy3

10 months ago Matthew Thornton ▴ 380

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532

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Cytoscape RCy3 RCy

updated 14 months ago by alex.pico ▴ 30 • written 15 months ago by David R ▴ 90

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Network RCy3

updated 14 months ago by alex.pico ▴ 30 • written 15 months ago by David R ▴ 90

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797

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RCy3 Cytohubba

updated 14 months ago by alex.pico ▴ 30 • written 15 months ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

22 months ago Ortega-C ▴ 10

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RCy3

updated 2.2 years ago by alex.pico ▴ 30 • written 2.2 years ago by adR ▴ 40

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GEOquery CancerData limma RCy3 CancerInSilico

updated 3.4 years ago by Steve Lianoglou ★ 13k • written 3.4 years ago by Caitlin ▴ 50

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rcy3

updated 4.3 years ago by alex.pico ▴ 30 • written 5.2 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

4.3 years ago Emilia ▴ 40

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966

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RCy3 Cytoscape R Newick Bioconductor

updated 4.3 years ago by alex.pico ▴ 30 • written 4.7 years ago by ellisjc • 0

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RCy3 Cytoscape Rgraphviz GOstats

5.9 years ago Matthew Thornton ▴ 380

12 results • Page 1 of 1

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

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Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

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