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RCy3
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reset
1
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2
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470
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KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
5 months ago • updated 4 months ago
Arindam
▴ 80
2
votes
2
replies
819
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
9 months ago
Matthew Thornton
▴ 380
1
vote
1
reply
493
views
Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 13 months ago by
alex.pico
▴ 30 • written 14 months ago by
David R
▴ 90
1
vote
1
reply
1.2k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 13 months ago by
alex.pico
▴ 30 • written 14 months ago by
David R
▴ 90
1
vote
1
reply
719
views
Cytohubba in RCY3
RCy3
Cytohubba
updated 13 months ago by
alex.pico
▴ 30 • written 13 months ago by
jzhan067
▴ 10
3
votes
7
replies
1.9k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
21 months ago
Ortega-C
▴ 10
1
vote
1
reply
951
views
how to call an app from Cytoscape using R?
RCy3
updated 2.1 years ago by
alex.pico
▴ 30 • written 2.1 years ago by
adR
▴ 40
2
votes
3
replies
1.7k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 3.3 years ago by
Steve Lianoglou
★ 13k • written 3.3 years ago by
Caitlin
▴ 50
1
vote
2
replies
1.1k
views
RCy3 Cytoscape package question
rcy3
updated 4.2 years ago by
alex.pico
▴ 30 • written 5.1 years ago by
hanna226613
▴ 10
1
vote
3
replies
1.6k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape
Pathways
Wikipathways
rWikiPathways
RCy3
4.2 years ago
Emilia
▴ 40
0
votes
1
reply
941
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 4.2 years ago by
alex.pico
▴ 30 • written 4.6 years ago by
ellisjc
• 0
3
votes
4
replies
1.7k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
5.8 years ago
Matthew Thornton
▴ 380
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