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RCy3
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reset
1
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2
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375
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KEGGgraph result difference
igraph
KEGGgraph
RCy3
GraphNEL
9 weeks ago • updated 5 weeks ago
Arindam
▴ 80
2
votes
2
replies
693
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
6 months ago
Matthew Thornton
▴ 380
1
vote
1
reply
431
views
Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 10 months ago by
alex.pico
▴ 30 • written 11 months ago by
David R
▴ 90
1
vote
1
reply
1.1k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 10 months ago by
alex.pico
▴ 30 • written 11 months ago by
David R
▴ 90
1
vote
1
reply
597
views
Cytohubba in RCY3
RCy3
Cytohubba
updated 10 months ago by
alex.pico
▴ 30 • written 11 months ago by
jzhan067
▴ 10
3
votes
7
replies
1.7k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
18 months ago
Ortega-C
▴ 10
1
vote
1
reply
859
views
how to call an app from Cytoscape using R?
RCy3
updated 22 months ago by
alex.pico
▴ 30 • written 22 months ago by
adR
▴ 40
2
votes
3
replies
1.6k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 3.0 years ago by
Steve Lianoglou
★ 13k • written 3.0 years ago by
Caitlin
▴ 50
1
vote
2
replies
1.1k
views
RCy3 Cytoscape package question
rcy3
updated 3.9 years ago by
alex.pico
▴ 30 • written 4.9 years ago by
hanna226613
▴ 10
1
vote
3
replies
1.5k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape
Pathways
Wikipathways
rWikiPathways
RCy3
4.0 years ago • updated 3.9 years ago
Emilia
▴ 40
0
votes
1
reply
891
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 3.9 years ago by
alex.pico
▴ 30 • written 4.3 years ago by
ellisjc
• 0
3
votes
4
replies
1.6k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
5.5 years ago
Matthew Thornton
▴ 380
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
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https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
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Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
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Melisa Tecik
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Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
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