Showing : RCy3 • reset
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
14 months ago • updated 12 months ago Arindam ▴ 80
2
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2
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1.2k
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
18 months ago • updated 17 months ago Matthew Thornton ▴ 380
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664
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 90
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1
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1.5k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 90
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1
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1.2k
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Cytohubba in RCY3
RCy3 Cytohubba
updated 22 months ago by ▴ 30 • written 22 months ago by ▴ 10
3
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7
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2.4k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.5 years ago Ortega-C ▴ 10
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1.2k
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how to call an app from Cytoscape using R?
RCy3
updated 2.8 years ago by ▴ 30 • written 2.8 years ago by ▴ 40
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3
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2.2k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.0 years ago by ★ 13k • written 4.0 years ago by ▴ 50
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2
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1.4k
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RCy3 Cytoscape package question
rcy3
updated 4.9 years ago by ▴ 30 • written 5.8 years ago by ▴ 10
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3
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1.9k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
4.9 years ago Emilia ▴ 40
0
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1.1k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.9 years ago by ▴ 30 • written 5.3 years ago by • 0
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4
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.5 years ago Matthew Thornton ▴ 380
12 results • Page 1 of 1
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Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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