Bioconductor RCy3

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igraph KEGGgraph RCy3 GraphNEL

16 months ago • updated 15 months ago Arindam ▴ 80

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RCy3

20 months ago Matthew Thornton ▴ 390

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760

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Cytoscape RCy3 RCy

updated 2.1 years ago by alex.pico ▴ 30 • written 2.1 years ago by David R ▴ 90

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Network RCy3

updated 2.1 years ago by alex.pico ▴ 30 • written 2.1 years ago by David R ▴ 90

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RCy3 Cytohubba

updated 2.1 years ago by alex.pico ▴ 30 • written 2.1 years ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

2.7 years ago Ortega-C ▴ 10

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RCy3

updated 3.0 years ago by alex.pico ▴ 30 • written 3.0 years ago by adR ▴ 40

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2.3k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 4.2 years ago by Steve Lianoglou ★ 13k • written 4.2 years ago by Caitlin ▴ 50

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rcy3

updated 5.1 years ago by alex.pico ▴ 30 • written 6.1 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

5.1 years ago Emilia ▴ 40

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1.2k

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RCy3 Cytoscape R Newick Bioconductor

updated 5.1 years ago by alex.pico ▴ 30 • written 5.5 years ago by ellisjc • 0

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RCy3 Cytoscape Rgraphviz GOstats

6.7 years ago Matthew Thornton ▴ 390

12 results • Page 1 of 1

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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