Showing : RCy3 • reset
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
7 months ago • updated 6 months ago Arindam ▴ 80
2
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2
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967
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
11 months ago Matthew Thornton ▴ 380
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555
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 15 months ago by ▴ 30 • written 16 months ago by ▴ 90
1
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1
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1.3k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 15 months ago by ▴ 30 • written 16 months ago by ▴ 90
1
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1
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871
views
Cytohubba in RCY3
RCy3 Cytohubba
updated 15 months ago by ▴ 30 • written 16 months ago by ▴ 10
3
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7
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2.1k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
23 months ago Ortega-C ▴ 10
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1
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1.0k
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how to call an app from Cytoscape using R?
RCy3
updated 2.3 years ago by ▴ 30 • written 2.3 years ago by ▴ 40
2
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3
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1.9k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 3.4 years ago by ★ 13k • written 3.4 years ago by ▴ 50
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2
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1.2k
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RCy3 Cytoscape package question
rcy3
updated 4.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
1
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3
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1.7k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
4.4 years ago • updated 4.3 years ago Emilia ▴ 40
0
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1
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975
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.3 years ago by ▴ 30 • written 4.8 years ago by • 0
3
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4
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1.8k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.9 years ago Matthew Thornton ▴ 380
12 results • Page 1 of 1
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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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