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RUVNormalize
•
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0
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4
replies
2.2k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
23 months ago • updated 22 months ago
Mohamed
▴ 30
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.8 years ago by
davide risso
▴ 950 • written 6.8 years ago by
Nik Tuzov
▴ 80
2
votes
6
replies
1.5k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.1 years ago • updated 8.0 years ago
thomas.wolfe
• 0
2
votes
1
reply
1.3k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 6.9 years ago by
davide risso
▴ 950 • written 6.9 years ago by
manish20072013
• 0
2
votes
1
reply
1.2k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 8.9 years ago by
laurent.jacob
▴ 10 • written 9.0 years ago by
Dario Strbenac
★ 1.5k
0
votes
2
replies
1.0k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.3 years ago by
Dario Strbenac
★ 1.5k • written 6.3 years ago by
massimo.acquaviva.78
• 0
1
vote
3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.8 years ago
Nik Tuzov
▴ 80
1
vote
1
reply
1.3k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 8.9 years ago by
laurent.jacob
▴ 10 • written 8.9 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.8 years ago
anthonycolombo60
• 0
1
vote
2
replies
864
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
13 months ago
AZ
▴ 30
0
votes
0
replies
1.3k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.4 years ago
thomas.wolfe
• 0
0
votes
1
reply
623
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.6 years ago
losik
• 0
12 results • Page
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Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
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