Bioconductor RefSeq

Showing : RefSeq • reset

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1.1k

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refseq Bioconductor conversion

4.9 years ago heiko_kin ▴ 60

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864

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RefSeq Chromosome Mutalyzer

5.6 years ago heiko_kin ▴ 60

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2.8k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by holmkn • 0

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3.4k

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edgeR ENEMBL RefSeq

updated 6.6 years ago by Gordon Smyth 53k • written 6.6 years ago by mzillur • 0

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3.1k

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genomicfeatures maketxdbfromucsc refseq

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Sebastien Vigneau ▴ 10

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4.5k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 9.9 years ago by Robert Castelo ★ 3.4k • written 9.9 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.3 years ago by xiaojing.wang ▴ 50 • written 10.3 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

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Comment: Bioconductor 3.22 Released! by residentialplayt • 0

Every run balances on the line between control and collapse. That where [Run3][1] lives on the razor thin edge of reaction, where hesitatio…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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