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RefSeq
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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
4.8 years ago
heiko_kin
▴ 60
0
votes
0
replies
848
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
5.5 years ago
heiko_kin
▴ 60
0
votes
5
replies
2.8k
views
Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport
Gene IDs
txdb
RefSeq
Salmon
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
holmkn
• 0
1
vote
3
replies
3.4k
views
ENSEBL gene_ID in edgeR analysis
edgeR
ENEMBL
RefSeq
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
mzillur
• 0
6
votes
7
replies
3.1k
views
makeTxDbFromUCSC fails to download refLink table
genomicfeatures
maketxdbfromucsc
refseq
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
Sebastien Vigneau
▴ 10
8
votes
7
replies
4.4k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.6k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 9.9 years ago by
Robert Castelo
★ 3.4k • written 9.9 years ago by
efoss
▴ 10
4
votes
1
reply
4.2k
views
getting the longest transcript by gene from Refseq
refseq
annotationhub
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
dalloliogm
▴ 50
2
votes
2
replies
2.0k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
9 results • Page
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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