Bioconductor RefSeq

Showing : RefSeq • reset

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1.1k

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refseq Bioconductor conversion

4.8 years ago heiko_kin ▴ 60

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848

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RefSeq Chromosome Mutalyzer

5.5 years ago heiko_kin ▴ 60

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2.8k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by holmkn • 0

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3.4k

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edgeR ENEMBL RefSeq

updated 6.6 years ago by Gordon Smyth 53k • written 6.6 years ago by mzillur • 0

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3.1k

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genomicfeatures maketxdbfromucsc refseq

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by Sebastien Vigneau ▴ 10

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4.4k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 9.9 years ago by Robert Castelo ★ 3.4k • written 9.9 years ago by efoss ▴ 10

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4.2k

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refseq annotationhub

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by dalloliogm ▴ 50

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2.0k

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customprodb dbsnp refseq varianttools

updated 10.3 years ago by xiaojing.wang ▴ 50 • written 10.3 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

Answer: Gatins Set error by James W. MacDonald 68k

`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.

Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k

Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…

Votes

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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