Bioconductor RefSeq

Showing : RefSeq • reset

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1.0k

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refseq Bioconductor conversion

4.2 years ago heiko_kin ▴ 60

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698

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RefSeq Chromosome Mutalyzer

4.8 years ago heiko_kin ▴ 60

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2.4k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by holmkn • 0

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3.2k

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edgeR ENEMBL RefSeq

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by mzillur • 0

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2.8k

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genomicfeatures maketxdbfromucsc refseq

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Sebastien Vigneau ▴ 10

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4.0k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by gokcen.eraslan ▴ 10

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3.2k

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promoter granges refseq ucsc organismdb

updated 9.2 years ago by Robert Castelo ★ 3.4k • written 9.2 years ago by efoss ▴ 10

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4.0k

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refseq annotationhub

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by dalloliogm ▴ 50

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1.9k

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customprodb dbsnp refseq varianttools

updated 9.6 years ago by xiaojing.wang ▴ 50 • written 9.6 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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