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RefSeq
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1.1k
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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
4.9 years ago
heiko_kin
▴ 60
0
votes
0
replies
864
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
5.6 years ago
heiko_kin
▴ 60
0
votes
5
replies
2.8k
views
Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport
Gene IDs
txdb
RefSeq
Salmon
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
holmkn
• 0
1
vote
3
replies
3.4k
views
ENSEBL gene_ID in edgeR analysis
edgeR
ENEMBL
RefSeq
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
mzillur
• 0
6
votes
7
replies
3.1k
views
makeTxDbFromUCSC fails to download refLink table
genomicfeatures
maketxdbfromucsc
refseq
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
Sebastien Vigneau
▴ 10
8
votes
7
replies
4.5k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.6k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 9.9 years ago by
Robert Castelo
★ 3.4k • written 9.9 years ago by
efoss
▴ 10
4
votes
1
reply
4.3k
views
getting the longest transcript by gene from Refseq
refseq
annotationhub
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
dalloliogm
▴ 50
2
votes
2
replies
2.1k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
9 results • Page
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Comment: Bioconductor 3.22 Released!
by
residentialplayt
• 0
Every run balances on the line between control and collapse. That where [Run3][1] lives on the razor thin edge of reaction, where hesitatio…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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