Bioconductor RefSeq

Showing : RefSeq • reset

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1.2k

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refseq Bioconductor conversion

5.0 years ago heiko_kin ▴ 60

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883

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RefSeq Chromosome Mutalyzer

5.6 years ago heiko_kin ▴ 60

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2.8k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by holmkn • 0

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3.5k

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edgeR ENEMBL RefSeq

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Sebastien Vigneau ▴ 10

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4.6k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 10.0 years ago by Robert Castelo ★ 3.4k • written 10.0 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.2 years ago by Martin Morgan 25k • written 10.2 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.4 years ago by xiaojing.wang ▴ 50 • written 10.4 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

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Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k

To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…

Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k

The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…

Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k

Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…

Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k

The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…

Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k

Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…

Votes

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Awards • All

Scholar to Gordon Smyth 53k