Bioconductor RefSeq

Showing : RefSeq • reset

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1.2k

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refseq Bioconductor conversion

5.2 years ago heiko_kin ▴ 60

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1.0k

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RefSeq Chromosome Mutalyzer

5.9 years ago heiko_kin ▴ 60

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3.0k

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tximport Gene IDs txdb RefSeq Salmon

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by holmkn • 0

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3.6k

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edgeR ENEMBL RefSeq

updated 6.9 years ago by Gordon Smyth 53k • written 6.9 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by Sebastien Vigneau ▴ 10

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4.9k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by gokcen.eraslan ▴ 10

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3.8k

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promoter granges refseq ucsc organismdb

updated 10.3 years ago by Robert Castelo ★ 3.4k • written 10.3 years ago by efoss ▴ 10

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4.4k

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refseq annotationhub

updated 10.4 years ago by Martin Morgan 25k • written 10.4 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.6 years ago by xiaojing.wang ▴ 50 • written 10.6 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Answer: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…

Comment: Question on processing compound protein groups in limpa by JKim • 0

Many thanks. I appreciate your advice.

Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k

Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…

Answer: Correct usage of limpa for protein input by Gordon Smyth 53k

limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…

Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0

Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…

Votes

Answer: Question on processing compound protein groups in limpa

Answer: Correct usage of limpa for protein input

A: Interpretaion of dendrogram height in WGCNA?

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Popular Question to Dario Strbenac ★ 1.6k

Popular Question to chirag.parsania ▴ 10