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SGSeq
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0
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0
replies
96
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
17 days ago
jk
• 0
0
votes
0
replies
221
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
4 months ago
Alison
• 0
0
votes
4
replies
1.0k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq
limma
edgeR
updated 3.4 years ago by
Leonard Goldstein
▴ 150 • written 3.4 years ago by
zliu
• 0
3
votes
8
replies
2.9k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 4.2 years ago by
anjanhazra
• 0 • written 7.6 years ago by
Sylvain Foisy
▴ 50
0
votes
1
reply
688
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 4.3 years ago by
Leonard Goldstein
▴ 150 • written 4.3 years ago by
anjanhazra
• 0
3
votes
3
replies
830
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 4.3 years ago by
Leonard Goldstein
▴ 150 • written 4.3 years ago by
116100016
• 0
0
votes
2
replies
740
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 4.4 years ago by
Leonard Goldstein
▴ 150 • written 4.4 years ago by
116100016
• 0
0
votes
0
replies
816
views
How to run my own data using SGSeq?
annotation
sgseq
updated 5.1 years ago by
shepherl
3.8k • written 5.1 years ago by
huizeng
• 0
0
votes
6
replies
1.4k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq
alternative splicing
SGSeq
5.4 years ago
andrea.bast
• 0
0
votes
1
reply
882
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 6.4 years ago by
Leonard Goldstein
▴ 150 • written 6.4 years ago by
mgdrnl
• 0
1
vote
1
reply
1.6k
views
SGSeq error on getBamInfo
SGSeq
getBamInfo
RNASeq
updated 6.5 years ago by
Leonard Goldstein
▴ 150 • written 6.5 years ago by
oolongoni
▴ 10
3
votes
5
replies
1.5k
views
R session crash with SGSeq::convertToTxFeatures
crash
SGSeq
TxDb
makeTxDbFromBiomart
TxFeatures
updated 6.5 years ago by
Leonard Goldstein
▴ 150 • written 6.5 years ago by
oolongoni
▴ 10
6
votes
4
replies
1.5k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 6.6 years ago by
Leonard Goldstein
▴ 150 • written 6.6 years ago by
Sylvain Foisy
▴ 50
0
votes
3
replies
1.1k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 6.7 years ago by
Leonard Goldstein
▴ 150 • written 6.7 years ago by
amanda.joy.price
• 0
0
votes
5
replies
1.6k
views
Error when running getSGFeatureCounts
SGSeq
software error
updated 7.1 years ago by
Leonard Goldstein
▴ 150 • written 7.1 years ago by
jpromero
• 0
0
votes
15
replies
2.0k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq
analyzevariants
updated 7.3 years ago by
Leonard Goldstein
▴ 150 • written 7.5 years ago by
Sylvain Foisy
▴ 50
0
votes
15
replies
3.1k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 7.5 years ago by
Leonard Goldstein
▴ 150 • written 7.6 years ago by
Sylvain Foisy
▴ 50
3
votes
16
replies
2.5k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.0 years ago by
Leonard Goldstein
▴ 150 • written 8.0 years ago by
vakul.mohanty
▴ 10
2
votes
2
replies
1.5k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 8.1 years ago by
Leonard Goldstein
▴ 150 • written 8.1 years ago by
Chao-Jen Wong
▴ 30
0
votes
6
replies
1.8k
views
Error when predicting features with SGSeq
SGSeq
updated 8.7 years ago by
Leonard Goldstein
▴ 70 • written 8.7 years ago by
Helen Zhou
▴ 140
0
votes
6
replies
2.1k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.3 years ago • updated 9.2 years ago
Paolo Guarnieri
▴ 20
21 results • Page
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Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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