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SingleCellData
•
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2
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4
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913
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Summary of library size factor is all equal to one
SingleCell
SingleCellData
SingleCellWorkflow
SingleCellExperiment
20 months ago • updated 19 months ago
Romina
• 0
2
votes
1
reply
1.7k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
NGS_enthusiast
• 0
2
votes
2
replies
788
views
How to detect LacZ tagged cells from single cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
19 months ago
k1m
▴ 20
1
vote
0
replies
612
views
Job:
Research Assistant - Computational Biology/Immunology, Memorial Sloan Kettering, New York
SingleCellData
ComputationalBiology
13 months ago
Chrysothemis
▴ 10
1
vote
3
replies
1.9k
views
10X FeatureBarcode producing too many "cells"
SingleCellExperiment
DropletUtils
SingleCellData
updated 3.3 years ago by
Aaron Lun
★ 28k • written 3.3 years ago by
msn
▴ 10
0
votes
2
replies
350
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 5 months ago by
ATpoint
★ 4.1k • written 5 months ago by
yw24418
• 0
0
votes
0
replies
538
views
Gene Id duplicated
SingleCell
SingleCellData
updated 19 months ago by
ATpoint
★ 4.1k • written 19 months ago by
Romina
• 0
0
votes
1
reply
962
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 2.0 years ago by
luke.zappia
▴ 50 • written 2.0 years ago by
Fatima
• 0
0
votes
3
replies
676
views
insufficient unique points for computing knee/inflection points
DropletUtils
SingleCellData
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
p.vlachou-efstathiou
• 0
0
votes
3
replies
493
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse
R
SingleCellExperiment
SingleCellData
updated 4 months ago by
daenerystargaryen56
• 0 • written 4 months ago by
Sitapriya
• 0
0
votes
1
reply
787
views
Running PLAGE gets killed
GSVA
SingleCellData
updated 2.1 years ago by
Robert Castelo
★ 3.3k • written 2.1 years ago by
Amna
• 0
0
votes
0
replies
735
views
Job:
Job as a bioinformatician in Hamburg, Germany
DimensionReduction
SingleCellData
multiomics
MachineLearning
16 months ago
Diego's
• 0
0
votes
2
replies
899
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR
SingleCellExperiment
SingleCellData
10 months ago
Matvii Mykhailichenko
• 0
0
votes
1
reply
254
views
Dimensionality reduction visualization
imcRtools
SingleCellData
imcdatasets
SpatialWorkflow
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Simon
• 0
14 results • Page
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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