Bioconductor Tximport

Showing : Tximport • reset

votes

replies

4.2k

views

Tutorial tximport

updated 3 months ago by Michael Love 43k • written 7.6 years ago by nelson.s.garcia ▴ 10

votes

540

views

tximport DESeq2

updated 5 months ago by James W. MacDonald 68k • written 5 months ago by IUH • 0

votes

replies

993

views

kallisto tximport ensembl

updated 5 months ago by Abbott • 0 • written 6 months ago by Nicholas • 0

votes

741

views

tximport

updated 5 months ago by Michael Love 43k • written 6 months ago by Nicholas • 0

votes

replies

4.0k

views

deseq2 tximport

updated 6 months ago by Michael Love 43k • written 5.6 years ago by zroger499 • 0

votes

473

views

tximport tximeta Bioconductor

updated 7 months ago by ATpoint ★ 5.0k • written 7 months ago by yob4003 • 0

votes

replies

2.7k

views

DESeq2 tximport

updated 7 months ago by ben • 0 • written 3.2 years ago by L ▴ 50

votes

replies

1.5k

views

tximport rhdf5

8 months ago Sofia • 0

votes

replies

883

views

kallisto tximport TOIL

9 months ago Nicholas • 0

votes

replies

1.4k

views

fishpond tximport tximeta

updated 11 months ago by Im • 0 • written 11 months ago by brown.annaleigh • 0

votes

replies

3.9k

views

edgeR tximport differential expression

updated 11 months ago by Gordon Smyth 53k • written 5.6 years ago by hollandademello ▴ 20

11 results • Page 1 of 1

Recent ...

Replies

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All