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VariantFiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
2.3 years ago
Bogdan
▴ 670
0
votes
1
reply
748
views
VariantFiltering error
VariantFiltering
updated 2.6 years ago by
Robert Castelo
★ 3.4k • written 2.6 years ago by
Andrew Beggs
▴ 90
0
votes
1
reply
3.2k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Mohamed
▴ 30
0
votes
3
replies
1.9k
views
library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
8.4 years ago
Claus.Hultschig
• 0
3
votes
2
replies
2.0k
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filtering VCF files
variantannotation
variantfiltering
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.5k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
10.5 years ago
claire.simpson
• 0
4
votes
0
replies
1.9k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
10.6 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.7k
views
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 10.7 years ago by
Robert Castelo
★ 3.4k • written 10.7 years ago by
Stefanie Tauber
▴ 40
0
votes
0
replies
2.1k
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problems installing VariantFiltering package
VariantFiltering
VariantFiltering
11.7 years ago
Robert Castelo
★ 3.4k
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Answer: When to use edgeR or limma
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68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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This support site is meant primarily for helping people with technical questions about using Bioconductor packages. For general analysis qu…
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limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
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Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
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