Bioconductor VariantFiltering

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VariantAnnotation VariantFiltering

14 months ago Bogdan ▴ 670

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559

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VariantFiltering

updated 17 months ago by Robert Castelo ★ 3.4k • written 17 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

7.3 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Bogdan ▴ 670

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VariantFiltering

9.4 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

9.4 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 9.6 years ago by Robert Castelo ★ 3.4k • written 9.6 years ago by Stefanie Tauber ▴ 40

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1.9k

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VariantFiltering VariantFiltering

10.5 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

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Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

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Scholar to James W. MacDonald 67k