Showing : affy • reset
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chips/array supported by BioC
affy affy
updated 19.3 years ago by ▴ 430 • written 19.3 years ago by ▴ 10
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[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
19.3 years ago Todd Nick ▴ 10
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error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
19.3 years ago Levi Waldron ▴ 30
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poplarcdf uninstallable
cdf affy cdf affy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 30
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Limma Modeling
affy limma affy limma
updated 19.3 years ago by ★ 6.0k • written 19.3 years ago by ▴ 10
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1
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 160
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6
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no direct or inherited method for function phenoData
affy affy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 180
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10
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2.5k
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AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 19.3 years ago by ★ 2.9k • written 19.4 years ago by ★ 1.6k
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Make a cdf package for unconventional Affymetrix chips
Microarray cdf affy Microarray cdf affy
updated 19.3 years ago by ★ 6.5k • written 19.3 years ago by ▴ 10
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Problem of using Affy!
affy affy
updated 19.3 years ago by ★ 7.4k • written 19.4 years ago by ▴ 10
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just.gcrma and normalisation
Genetics affy gcrma Genetics affy gcrma
updated 19.4 years ago by ▴ 200 • written 19.4 years ago by ▴ 310
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6
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Combining two datasets - help to use GeneMeta.
rae230a affy GeneMeta rae230a affy GeneMeta
updated 19.4 years ago by ▴ 230 • written 19.4 years ago by ▴ 480
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combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
19.4 years ago Lewin Eisele ▴ 10
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3
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error creating new exprSet
affy affy
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 270
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2
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median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 19.4 years ago by ★ 1.2k • written 19.4 years ago by ▴ 270
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Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 19.4 years ago by ▴ 50 • written 19.4 years ago by ▴ 20
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mouse4302
Annotation mouse4302 probe affy Annotation mouse4302 probe affy
19.4 years ago Nianhua Li ▴ 870
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plotAffyRNAdeg x-axis length of RNA digestion plot
affy affy
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 40
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.4 years ago Pedro López Romero ▴ 360
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Subsetting limma TestResults
Annotation affy limma Annotation affy limma
19.4 years ago Gordon Smyth 53k
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Subsetting limma TestResults
Annotation affy limma Annotation affy limma
19.4 years ago Michael Strehle ▴ 10
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6
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1.8k
views
Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Biobase affy Biobase affy
updated 19.4 years ago by 25k • written 19.4 years ago by ▴ 500
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2
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problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
19.4 years ago Kimpel, Mark W ▴ 890
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1
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964
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day-of-hybridisation variability
affy affy
updated 19.4 years ago by ▴ 80 • written 19.4 years ago by ▴ 270
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8
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error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 520
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vsn and RMA-affy ...?
Normalization affy vsn Normalization affy vsn
updated 19.4 years ago by ★ 13k • written 19.4 years ago by ▴ 310
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LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.4 years ago Mark Dunning ▴ 320
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justGCRMA error in BioC 1.8
Microarray cdf affy gcrma matchprobes Microarray cdf affy gcrma matchprobes
19.4 years ago James W. MacDonald 68k
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758
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Fwd: Problem with justRMA and hgu133aplus2cdf
affy affy
19.5 years ago Sean Davis 21k
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3
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1.1k
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CDF environment for a custom Affy chip
cdf affy cdf affy
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 30
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7
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2.7k
views
Memory Issue under WinXP x64 (64 bit Windows XP)
affy affy
19.5 years ago Carleton Garrett ▴ 80
0
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1
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929
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Question regarding handling technical replicates for Affy arrays
affy affy
updated 19.5 years ago by ★ 6.0k • written 19.5 years ago by 53k
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0
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981
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Question regarding handling technical replicates for Affy arrays
GO Clustering affy limma GO Clustering affy limma
19.5 years ago Gordon Smyth 53k
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Question regarding handling technical replicates for Affy arrays
GO Clustering affy limma GO Clustering affy limma
19.5 years ago noel0925@sbcglobal.net ▴ 90
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[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 19.5 years ago by ▴ 190 • written 19.5 years ago by 21k
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
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4
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2.3k
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Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 19.5 years ago by 25k • written 19.5 years ago by ★ 2.2k
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1.2k
views
Hu25K annotation
Annotation Cancer Breast affy Annotation Cancer Breast affy
updated 19.5 years ago by ▴ 110 • written 19.5 years ago by ▴ 70
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1
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1.1k
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User-defined genes in limma
GO affy limma GO affy limma
updated 19.5 years ago by ★ 2.2k • written 19.5 years ago by ▴ 30
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3
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Affy's .DTT format?
affy affy
updated 19.5 years ago by ★ 6.5k • written 19.5 years ago by ★ 2.2k
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0
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721
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Where does BioC metadata come from?
Annotation hgu95av2 affy Annotation hgu95av2 affy
19.5 years ago Suraj Menon ▴ 50
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912
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affyPLM QC Assessment problem
affy affyPLM affy affyPLM
19.5 years ago Tan, Ruimin ▴ 50
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0
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998
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affyPLM QC
affy affyPLM affy affyPLM
19.5 years ago Tan, Ruimin ▴ 50
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0
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998
views
alternative CDF (Tarca, Adi)
qPCR cdf probe affy qPCR cdf probe affy
19.5 years ago raffaele calogero ▴ 500
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2
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1.2k
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subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
19.5 years ago Kimpel, Mark W ▴ 890
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0
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793
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Affy E. coli FYI
Annotation GO affy Annotation GO affy
19.5 years ago Jenny Drnevich ★ 2.2k
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0
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1.2k
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problem with chromosome location in annotations WAS: search archives and annnotate questions
Annotation GO annotate affy AnnBuilder codelink Annotation GO annotate affy AnnBuilder
19.5 years ago Diego Diez ▴ 760
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3
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1.1k
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search archives and annnotate questions
affy affy
19.5 years ago Kimpel, Mark W ▴ 890
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1
reply
1.6k
views
How does BioC map from Probe ID to Entrez Gene?
Annotation GO probe affy Annotation GO probe affy
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ▴ 320
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0
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661
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Sam always wants more observations
probe Biobase affy affyPLM probe Biobase affy affyPLM
19.5 years ago Charles Crane ▴ 30
1,805 results • Page 21 of 37
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
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Answer: Failure to download resources (MeSHDb) from AnnotationHub
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