Showing : affydata • reset
1
vote
1
reply
1.4k
views
A question about paired data and how to set up the designmatrix in LIMMA
limma affydata
19.8 years ago • updated 9 months ago Gordon Smyth 52k
0
votes
8
replies
2.4k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 18.4 years ago by ▴ 190 • written 18.4 years ago by ★ 2.9k
0
votes
3
replies
1.1k
views
Error loading reposTools
reposTools affy affydata reposTools affy affydata
22.0 years ago Warnes, Gregory R ▴ 460
0
votes
1
reply
1.4k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 21.9 years ago by ★ 2.9k • written 21.9 years ago by ▴ 130
0
votes
1
reply
1.2k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 21.6 years ago by 6.7k • written 21.6 years ago by ▴ 60
0
votes
1
reply
1.3k
views
affy package in MacOSX
affy affydata matchprobes affyPLM affy affydata matchprobes affyPLM
updated 20.8 years ago by ▴ 1000 • written 20.8 years ago by ▴ 60
0
votes
2
replies
1.6k
views
Bioconductor Digest, Vol 28, Issue 23
Normalization probe affy affydata limma marray BEAT Normalization probe affy affydata
updated 19.8 years ago by ★ 13k • written 19.8 years ago by 52k
0
votes
0
replies
1.1k
views
differences or 1-channel (was Re: Agilent Arrays)
Normalization GO probe affy affydata vsn limma marray BEAT Normalization GO probe affy
19.8 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
1.0k
views
A question about paired data and how to set up the designmatrix in LIMMA]
affydata limma affydata limma
19.8 years ago Gordon Smyth 52k
0
votes
0
replies
1.1k
views
missing function in duplicateCorrelation?
Biobase affy affydata limma affyPLM Biobase affy affydata limma affyPLM
19.3 years ago Jenny Drnevich ★ 2.2k
0
votes
3
replies
1.7k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.0 years ago by ▴ 70 • written 19.0 years ago by ★ 2.2k
0
votes
1
reply
1.2k
views
qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 160
0
votes
2
replies
1.7k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
18.7 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
1.0k
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
18.6 years ago k. brand ▴ 420
0
votes
0
replies
1.1k
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
18.6 years ago k. brand ▴ 420
0
votes
2
replies
1.4k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 18.6 years ago by ★ 1.2k • written 18.6 years ago by ▴ 420
0
votes
4
replies
1.5k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 18.5 years ago by 25k • written 18.5 years ago by ★ 2.2k
0
votes
12
replies
2.4k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 18.4 years ago by ★ 5.5k • written 18.4 years ago by ▴ 460
0
votes
1
reply
3.1k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 510
0
votes
10
replies
2.3k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 18.4 years ago by ▴ 460 • written 18.4 years ago by ▴ 70
0
votes
11
replies
3.1k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.4 years ago by ▴ 10 • written 18.4 years ago by ★ 2.2k
0
votes
0
replies
1.3k
views
flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
18.3 years ago Gordon Smyth 52k
0
votes
8
replies
2.0k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ★ 2.2k
0
votes
1
reply
1.3k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.1 years ago by 52k • written 18.1 years ago by ★ 2.2k
0
votes
1
reply
1.6k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.1 years ago by 68k • written 18.1 years ago by ★ 2.2k
0
votes
2
replies
2.0k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 18.1 years ago by 52k • written 18.1 years ago by ▴ 680
0
votes
0
replies
1.1k
views
simpleaffy problem - drosophila2
drosophila2 cdf affy affydata simpleaffy drosophila2 cdf affy affydata simpleaffy
17.9 years ago Yihuan Xu ▴ 130
0
votes
3
replies
1.6k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 450
0
votes
0
replies
1.1k
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
17.9 years ago lidaof ▴ 450
0
votes
0
replies
1.2k
views
Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
17.8 years ago Dave Jacoby ▴ 20
0
votes
5
replies
2.2k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 50
0
votes
7
replies
2.1k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 17.6 years ago by ★ 7.4k • written 17.6 years ago by ★ 2.2k
0
votes
0
replies
1.3k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
17.4 years ago Boel Brynedal ▴ 200
0
votes
1
reply
1.1k
views
getting original CEL files from Dilution
affydata affydata
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ▴ 840
0
votes
1
reply
2.3k
views
Example on constructing AffyBatch object
Biobase affydata Biobase affydata
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 950
0
votes
5
replies
2.2k
views
collect an expression dataset
limma CEL GEO affydata expresiondataset
updated 9.4 years ago by ★ 3.4k • written 9.4 years ago by • 0
0
votes
1
reply
1.1k
views
CEL file to expressionSet
affydata expressonset
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
0
votes
1
reply
3.0k
views
Reading sub-selected CEL files in R using ReadAffy()
Affy affydata
updated 8.0 years ago by 68k • written 8.0 years ago by ▴ 20
0
votes
2
replies
652
views
justRMA or similar for normalization with hg133a and hg133plus
hgu133plus2CellScore hthgu133a.db affydata
23 months ago Susanna • 0
0
votes
0
replies
1.4k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
18.5 years ago Martin Morgan 25k
0
votes
1
reply
952
views
Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata hgu133plus2.db AffymetrixChip
updated 21 months ago by ★ 4.8k • written 21 months ago by ▴ 20
42 results • Page 1 of 1
Recent ...
Replies
Comment: DeSeq Strategies for run to run Replication by Michael Love 43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR by Mengjun • 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning by ht • 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Votes
Comment: Differential expression analysis using two TCGA datasets
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
Awards • All
Popular Question to Mengjun • 0
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to matthew • 0
Locations • All
The city by the bay, 2 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
UPF, Barcelona, Spain, 2 hours ago
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform, 2 hours ago
Egypt, 5 hours ago
Traffic: 637 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6