Showing : affylmgui • reset
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affylmGUI problem with tkcmd
affylmGUI affylmGUI
updated 18.8 years ago by ▴ 80 • written 18.8 years ago by ★ 7.4k
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873
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affylmGUI problem with tkcmd
affylmGUI affylmGUI
18.8 years ago Wonjong Moon ▴ 80
0
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3
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1.4k
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Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 18.9 years ago by ▴ 450 • written 18.9 years ago by ▴ 70
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limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
19.4 years ago Gordon Smyth 53k
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1.3k
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LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.4 years ago Mark Dunning ▴ 320
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1.2k
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LimmaGUI for illumina data
GUI limma affylmGUI limmaGUI GUI limma affylmGUI limmaGUI
19.4 years ago Roy Williams ▴ 10
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617
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AffylmGUI
affylmGUI affylmGUI
19.5 years ago Gordon Smyth 53k
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1.1k
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Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
19.7 years ago James Wettenhall ▴ 1000
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1.1k
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Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 10
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1.0k
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FW: Question (vennDiagram vs. topTable) for AffylmGUI 1.3.0
GO limma affylmGUI GO limma affylmGUI
updated 20.1 years ago by 53k • written 20.1 years ago by ▴ 50
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935
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Analisys with MAS5 and affyPLM
affylmGUI affylmGUI
20.2 years ago Pedro Botías ▴ 80
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3
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1.2k
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Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
20.3 years ago Seth Falcon ★ 7.4k
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955
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Error messages in affylmGUI on PC with respect to plotting
Cancer limma affyPLM affylmGUI Cancer limma affyPLM affylmGUI
20.3 years ago Richard Friedman ★ 2.0k
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862
views
error message in affylmGUI on PC
Cancer affylmGUI Cancer affylmGUI
20.3 years ago Richard Friedman ★ 2.0k
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5
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1.8k
views
Problem with Installing affylmGUI on MAC OS X
Cancer affylmGUI Cancer affylmGUI
20.3 years ago Richard Friedman ★ 2.0k
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0
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1.2k
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Question (vennDiagram vs. topTable) + Patch (plotTitle for vennDiagram) for AffylmGUI 1.3.0
affylmGUI affylmGUI
20.4 years ago Steffen Moeller ▴ 40
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3
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1.5k
views
Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 20.4 years ago by 53k • written 20.4 years ago by ▴ 70
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678
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AffylmGUI Comparisons and Filtering
Microarray affylmGUI Microarray affylmGUI
20.4 years ago Quentin Anstee ▴ 110
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744
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Re: [Bioc-devel] Error in mget(ls(cdfenv), env = rgu34aGENENAME) : Object "rgu34aGENENAME" not found
Annotation GO affylmGUI Annotation GO affylmGUI
20.6 years ago James Wettenhall ▴ 1000
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1.1k
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Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
20.7 years ago Aaron Hamilton ▴ 30
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2
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1.2k
views
affylmGUI error when normalizing
Microarray Normalization affylmGUI Microarray Normalization affylmGUI
updated 20.7 years ago by ▴ 1000 • written 20.7 years ago by ▴ 30
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1
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788
views
Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 30
0
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0
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876
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affylmGUI - feedback, questions
gcrma GeneSpring affylmGUI gcrma GeneSpring affylmGUI
20.7 years ago SteffenMöller ▴ 30
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0
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827
views
Affymetrix CDF package
cdf affylmGUI cdf affylmGUI
20.8 years ago MShingyoji@lbl.gov ▴ 10
0
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4
replies
1.9k
views
tkrplot in R2.0 on Mac OS X
affylmGUI affylmGUI
updated 20.9 years ago by ▴ 1000 • written 20.9 years ago by ▴ 100
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0
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839
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affy and limma
Normalization affy affylmGUI convert Normalization affy affylmGUI convert
21.0 years ago Gordon Smyth 53k
0
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0
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799
views
affy and limma
Normalization affy affylmGUI convert Normalization affy affylmGUI convert
21.1 years ago Gareth Elvidge ▴ 10
0
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1
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1.4k
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Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
21.3 years ago James Wettenhall ▴ 1000
0
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0
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861
views
affylmGUI multiget
affylmGUI affylmGUI
21.3 years ago James Wettenhall ▴ 1000
0
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0
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888
views
affylmGUI fix (topTable/CDF name)
Annotation cdf affylmGUI Annotation cdf affylmGUI
21.3 years ago James Wettenhall ▴ 1000
0
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1
reply
1.2k
views
loading CEL files in affylmGUI
Annotation affylmGUI Annotation affylmGUI
updated 21.3 years ago by ▴ 1000 • written 21.3 years ago by ▴ 60
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3
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1.5k
views
Error in parse() loading affylmGUI
affylmGUI affylmGUI
updated 21.3 years ago by ▴ 1000 • written 21.3 years ago by ▴ 340
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0
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877
views
three way comparisons with affylmgui
affylmGUI affylmGUI
21.3 years ago Simon Kidd ▴ 180
0
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1
reply
943
views
affylmGUI
affylmGUI affylmGUI
updated 21.4 years ago by ▴ 1000 • written 21.4 years ago by ▴ 120
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1
reply
1.1k
views
Anopheles/malaria Affy chips
affy simpleaffy affylmGUI affy simpleaffy affylmGUI
updated 21.4 years ago by ▴ 950 • written 21.4 years ago by ▴ 510
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1.3k
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Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
21.4 years ago James Wettenhall ▴ 1000
0
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0
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935
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gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
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0
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1.2k
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
21.4 years ago James Wettenhall ▴ 1000
0
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1
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927
views
Is rma in affylmGUI different to affy rma?
affy affylmGUI affy affylmGUI
21.4 years ago Simon Kidd ▴ 180
0
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2
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1.1k
views
affylmGUI
drosgenome1 affylmGUI drosgenome1 affylmGUI
updated 21.4 years ago by ▴ 1000 • written 21.4 years ago by ▴ 180
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811
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Re: affylmGUI figures estrogen data set
GO affylmGUI GO affylmGUI
21.5 years ago James Wettenhall ▴ 1000
0
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0
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1.4k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
21.9 years ago James Wettenhall ▴ 1000
92 results • Page 2 of 2
Recent ...
Replies
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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