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Bioconductor ALL

17 months ago • updated 16 months ago simone.tiberi • 0

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ALL The DifferentialRegulation PathNet

written 21 months ago by Mine • 0

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updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by xxxsarahkimxxx • 0

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biocLite update all default ask

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bioconductor ALL linear model

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by detroit.drive • 0

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ALL bioconductor biobase exprs

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updated 8.0 years ago by Marcel Ramos 700 • written 8.0 years ago by mdfislam89 • 0

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installation packages bioconductor all

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by av • 0

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Comment: limma technical repeat correction by john • 0

@gordonsmyth Thank you for getting back to me and apologies for the confusion - `replicates_1` column indicates for a patient (cell line)…

Comment: Question about using LRT test for time course experiments with DESeq2 by Michael Love 42k

I understood your question above (at least I think so) and my response above remains relevant. > How can I get a coefficient/genes for th…

Answer: probe ID search for SNP (plink) by James W. MacDonald 67k

This site is meant to help people with questions about Bioconductor packages. Plink is not a Bioconductor package, or even an R package. Yo…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Benjamin • 0

Thanks Mike, I will post here again when this issue gets resolved.

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.5k

You are not the only biomaRt user to encounter this, and I contacted the Ensembl helpdesk. I got the reply below, which hopefully means it…

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Answer: biomaRt rnorvegicus_gene_ensembl not available anymore

Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

Answer: Why `FoldEnrichment`,`RichFactor`and `zScore` are not in the ReactomePA::enrichP

Comment: Why `FoldEnrichment`,`RichFactor`and `zScore` are not in the ReactomePA::enrichP

Answer: Analysis of 2*4 factorial design

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