Bioconductor Annotatr

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162

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annotatr

updated 9 weeks ago by James W. MacDonald 68k • written 9 weeks ago by Zach • 0

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516

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annotatr AnnotationHub

14 months ago hayleyw • 0

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447

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annotatr

14 months ago chuanjiao6 • 0

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annotatr regioneR gkmSVM

updated 16 months ago by Mahmoud • 0 • written 4.2 years ago by rohitsatyam102 ▴ 20

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797

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annotatr

23 months ago luca.s ▴ 50

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1.2k

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annotatr

2.6 years ago eric.rhoncalderon • 0

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Annotation annotatr

3.3 years ago Ahdee ▴ 50

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GenomicFeatures annotatr genomicFe

3.9 years ago António Miguel de Jesus Domingues ▴ 510

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annotatr GenomicRanges

4.4 years ago Nala • 0

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R installation packages annotatr biocmanager

5.0 years ago dakarai_esgdaille ▴ 10

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annotatr

updated 6.3 years ago by rcavalca ▴ 140 • written 6.3 years ago by sorjuelal • 0

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annotatr cpg

updated 6.4 years ago by rcavalca ▴ 140 • written 6.4 years ago by soli5 • 0

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annotatr

8.1 years ago vivianengoune • 0

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annotatr

updated 8.1 years ago by rcavalca ▴ 140 • written 8.1 years ago by cguzman.roma • 0

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annotatr

updated 8.3 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by divyswar01 • 0

15 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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