Showing : annotatr • reset
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Unknown gene transcripts after annotatr
annotatr
updated 11 months ago by 68k • written 11 months ago by • 0
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689
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Annotatr Duplicate Entries
annotatr AnnotationHub
written 23 months ago by • 0
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555
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annotatr rn7?
annotatr
23 months ago chuanjiao6 • 0
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1.7k
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 2.1 years ago by • 0 • written 5.0 years ago by ▴ 20
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948
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custom annotations with annotatr
annotatr
2.6 years ago luca.s ▴ 50
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1.4k
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Problem with annotations using annotatr
annotatr
3.4 years ago eric.rhoncalderon • 0
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1.1k
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Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
4.0 years ago Ahdee ▴ 60
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1.2k
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annotatr with custom TxDb
GenomicFeatures annotatr genomicFe
4.6 years ago António Miguel de Jesus Domingues ▴ 510
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1.2k
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annotatr package: GRanges object contains out-of-bound ranges
annotatr GenomicRanges
5.1 years ago Nala • 0
3
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4
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2.2k
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Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
5.7 years ago dakarai_esgdaille ▴ 10
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1.9k
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annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 7.1 years ago by ▴ 140 • written 7.1 years ago by • 0
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3
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2.1k
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CpG site not annotated with annotatr
annotatr cpg
updated 7.2 years ago by ▴ 140 • written 7.2 years ago by • 0
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3
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1.5k
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find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
8.8 years ago vivianengoune • 0
0
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2
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2.2k
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annotatr GRanges Error
annotatr
updated 8.9 years ago by ▴ 140 • written 8.9 years ago by • 0
4
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2
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1.6k
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Annotatr package not loading certain features
annotatr
updated 9.1 years ago by ★ 6.8k • written 9.1 years ago by • 0
15 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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