Showing : arrayQualityMetrics • reset
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arrayQualityMetrics error and question
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 280
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arrayQualityMetrics package - bugs and errors
limma affyPLM convert arrayQualityMetrics limma affyPLM convert arrayQualityMetrics
13.5 years ago Wolfgang Huber ★ 13k
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arrayQualityMetrics package - bugs and errors
limma affyPLM arrayQualityMetrics limma affyPLM arrayQualityMetrics
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 90
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arrayQualityMetrics produces non-interactive PCA plot (Figure 3)
arrayQualityMetrics arrayQualityMetrics
13.8 years ago Vladimir Zhurov ▴ 70
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1.7k
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arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
arrayQualityMetrics arrayQualityMetrics
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 30
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872
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array names in arrayQualityMetrics report
arrayQualityMetrics arrayQualityMetrics
14.0 years ago rchavez ▴ 20
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3.3k
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2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 14.2 years ago by ▴ 210 • written 14.2 years ago by ▴ 110
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how to make an MA plot with single color agilent microarray?
Microarray limma arrayQualityMetrics Microarray limma arrayQualityMetrics
14.2 years ago Wolfgang Huber ★ 13k
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2.5k
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2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 110
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2
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1.5k
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arrayQualityMEtrics
convert arrayQualityMetrics convert arrayQualityMetrics
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 210
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1.6k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.3 years ago chawla ▴ 190
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1.1k
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arrayQualityMetrics with R 2.13.0 fails
arrayQualityMetrics arrayQualityMetrics
updated 14.4 years ago by ★ 8.2k • written 14.4 years ago by ▴ 20
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arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 210
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.5 years ago Assa Yeroslaviz ★ 1.5k
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announcing a new version of arrayQualityMetrics in the development branch
GO arrayQualityMetrics GO arrayQualityMetrics
14.5 years ago Wolfgang Huber ★ 13k
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2
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2.2k
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arrayQualityMetrics is not working
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 60
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16
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2.9k
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arrayQualityMetrics error
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ▴ 340 • written 14.6 years ago by ▴ 200
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911
views
new arrayQualityMetrics 3.2.3 in release - was: arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
arrayQualityMetrics arrayQualityMetrics
14.8 years ago Wolfgang Huber ★ 13k
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1
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982
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arrayQualityMetrics
GO hgu133plus2 arrayQualityMetrics GO hgu133plus2 arrayQualityMetrics
updated 14.8 years ago by ★ 8.2k • written 14.8 years ago by ▴ 510
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arrayQualityMetrics::aqm.nuse and GeneST
arrayQualityMetrics arrayQualityMetrics
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 270
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10
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2.2k
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arrayQualityMetrics not producing all diagnostic plots
arrayQualityMetrics arrayQualityMetrics
14.9 years ago James F. Reid ▴ 610
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804
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Fwd: caught segfault in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
14.9 years ago Laurent Gatto 1.6k
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3
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1.3k
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caught segfault in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 14.9 years ago by ★ 13k • written 14.9 years ago by 1.6k
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1
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1.2k
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Problems with arrayQualityMetrics
Microarray Genetics GO arrayQualityMetrics Microarray Genetics GO arrayQualityMetrics
updated 15.2 years ago by ▴ 110 • written 15.2 years ago by ▴ 150
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
15.3 years ago Dick Beyer ★ 1.4k
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
15.3 years ago Daniel Brewer ★ 1.9k
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1.1k
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arrayQualityMetrics: beutifying the outputs
affy arrayQualityMetrics affy arrayQualityMetrics
updated 15.4 years ago by ▴ 110 • written 15.4 years ago by ▴ 80
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3
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1.3k
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quality assessment of microarray using arrayQualityMetrics
Microarray Normalization arrayQualityMetrics Microarray Normalization arrayQualityMetrics
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 70
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8
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6.3k
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arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 15.5 years ago by ▴ 110 • written 15.5 years ago by ▴ 50
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3
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1.9k
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arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 15.7 years ago by ▴ 630 • written 15.7 years ago by ▴ 160
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1
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1.4k
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QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 10
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1
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1.1k
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problem with arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 450
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2
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1.6k
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ArrayQualityMetrics: Problem with labels in plots
Annotation arrayQualityMetrics Annotation arrayQualityMetrics
15.8 years ago elliot harrison ▴ 230
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2
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1.4k
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ArrayQualityMetrics: Problem with labels in plots. A bug??
affyPLM arrayQualityMetrics affyPLM arrayQualityMetrics
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 40
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3
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1.6k
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ArrayQualityMetrics: Problem with labels in plots. A bug??
arrayQualityMetrics arrayQualityMetrics
updated 15.9 years ago by ▴ 280 • written 15.9 years ago by ▴ 150
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1
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1.1k
views
Error normalizing merged data sets
arrayQualityMetrics arrayQualityMetrics
updated 15.9 years ago by ▴ 910 • written 15.9 years ago by ▴ 70
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1.0k
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MAplot form arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
16.0 years ago Ingunn Berget ▴ 150
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1
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955
views
arrayQualityMetrics
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 80
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2
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1.0k
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arrayQualityMetrics -weighted bad spots Imagene files
arrayQualityMetrics arrayQualityMetrics
updated 16.4 years ago by ▴ 280 • written 16.4 years ago by ▴ 10
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2
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1.3k
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arrayQualityMetrics stringency & co
arrayQualityMetrics arrayQualityMetrics
updated 16.9 years ago by ▴ 280 • written 16.9 years ago by ▴ 220
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1
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1.7k
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arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 17.0 years ago by ▴ 680 • written 17.0 years ago by 25k
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0
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1.2k
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arrayQualityMetrics - how do I use this with an MAList object???
convert arrayQualityMetrics convert arrayQualityMetrics
17.0 years ago Park-Ng, Zaneta ▴ 40
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1
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1.1k
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arrayQualityMetrics, Outlier
arrayQualityMetrics arrayQualityMetrics
updated 17.0 years ago by ▴ 280 • written 17.0 years ago by ▴ 200
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1
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1.0k
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Array quality question
arrayQualityMetrics arrayQualityMetrics
updated 17.0 years ago by ★ 13k • written 17.0 years ago by ▴ 50
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1
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1.2k
views
Error in X11(paste("png::", filename, sep = ""),
arrayQualityMetrics arrayQualityMetrics
updated 17.0 years ago by ★ 2.4k • written 17.0 years ago by ▴ 200
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1
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1.4k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 200
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4
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1.7k
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 200
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2
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1.2k
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arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 17.1 years ago by ▴ 280 • written 17.1 years ago by ▴ 280
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3
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1.0k
views
Missing summary in HTML reports
arrayQualityMetrics arrayQualityMetrics
updated 17.1 years ago by ▴ 280 • written 17.1 years ago by ▴ 40
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1
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800
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Memory problems analyzing 16 chips using arrayQualityMetrics package
arrayQualityMetrics arrayQualityMetrics
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 40
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Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
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It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
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You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
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Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
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