Showing : assign • reset
0
votes
0
replies
627
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
3.8 years ago yueli7 ▴ 20
0
votes
1
reply
985
views
Query regarding DESeq
DESeq ASSIGN DESeq ASSIGN
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 10
0
votes
5
replies
4.3k
views
annotating microarray data with mogene10stv1
Microarray Annotation annotate limma ASSIGN Microarray Annotation annotate limma ASSIGN
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 70
0
votes
8
replies
3.1k
views
Annotation files for bacterial genome RNAseq
Alignment Annotation ASSIGN Alignment Annotation ASSIGN
updated 9.9 years ago by 65k • written 9.9 years ago by ▴ 80
0
votes
2
replies
1.2k
views
error on detecting regions
ASSIGN ASSIGN
updated 9.9 years ago by ▴ 440 • written 9.9 years ago by ★ 13k
0
votes
4
replies
1.4k
views
GenomicRanges select parameter
GenomicRanges ASSIGN GenomicRanges ASSIGN
updated 9.9 years ago by ▴ 30 • written 9.9 years ago by ★ 11k
0
votes
1
reply
2.4k
views
DataFrame(..., check.names=F); colnames change when assign data using '[[', not when using '[,]'
ASSIGN ASSIGN
updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 40
0
votes
3
replies
1.2k
views
Dealing with probes with high fold change but PA call 0
Clustering probe ASSIGN Clustering probe ASSIGN
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 230
0
votes
5
replies
2.2k
views
Single-channel GenePix analysis with Limma (bg correction, normalization, weights)
Microarray Normalization vsn limma ASSIGN Microarray Normalization vsn limma ASSIGN
updated 10.5 years ago by 50k • written 10.5 years ago by ▴ 40
0
votes
1
reply
1.3k
views
ChIPpeakAnno
ChIPpeakAnno ASSIGN ChIPpeakAnno ASSIGN
10.9 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
3.6k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 970
0
votes
1
reply
1.6k
views
Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 11.0 years ago by ★ 4.2k • written 11.0 years ago by ▴ 10
0
votes
5
replies
1.9k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
11.1 years ago • updated 11.0 years ago maziz@tgen.org ▴ 70
0
votes
1
reply
1.1k
views
fRMA for Gene ST arrays
affy oligo frma ASSIGN affy oligo frma ASSIGN
updated 11.1 years ago by ▴ 830 • written 11.1 years ago by ▴ 100
0
votes
0
replies
1.1k
views
how to use color to represent significant changed genes in maPlot of edgeR
ASSIGN ASSIGN
11.1 years ago wang peter ★ 2.0k
0
votes
5
replies
2.1k
views
yieldSize and paired end data in SummarizeOverlaps error?
BSgenome PROcess BSgenome ASSIGN BSgenome PROcess BSgenome ASSIGN
updated 11.1 years ago by ★ 6.8k • written 11.1 years ago by ▴ 10
0
votes
0
replies
832
views
Finding genes with minimal expression across a set of conditions?
ASSIGN ASSIGN
11.2 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
votes
2
replies
1.4k
views
Question regarding cellhts2 output
Normalization cellHTS2 ASSIGN Normalization cellHTS2 ASSIGN
11.8 years ago maziz@tgen.org ▴ 70
0
votes
12
replies
2.1k
views
Newbie methylation and stats question
probe ASSIGN probe ASSIGN
updated 11.9 years ago by ★ 4.2k • written 11.9 years ago by ▴ 440
0
votes
0
replies
2.7k
views
qrqc with error message of "unable to start device PNG" and "unable to open connection to X11 display"?
GO qrqc ASSIGN GO qrqc ASSIGN
11.9 years ago Sang Chul Choi ▴ 230
0
votes
4
replies
1.5k
views
edgeR: design matrix
ASSIGN ASSIGN
updated 11.9 years ago by 50k • written 11.9 years ago by ▴ 420
0
votes
4
replies
3.4k
views
edgeR : input and design matrix help
edgeR ASSIGN edgeR ASSIGN
11.9 years ago KJ Lim ▴ 420
0
votes
0
replies
1.1k
views
edgeR input and design matrix help
edgeR ASSIGN edgeR ASSIGN
12.0 years ago KJ Lim ▴ 420
0
votes
0
replies
1.0k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.1 years ago Manuela Di Russo ▴ 70
0
votes
1
reply
913
views
RangedData Element Metadata
Coverage rtracklayer ASSIGN Coverage rtracklayer ASSIGN
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 1.5k
0
votes
2
replies
948
views
Creating a customized cut flow with the affy/limma packages
GO limma ASSIGN GO limma ASSIGN
updated 12.2 years ago by 65k • written 12.2 years ago by ▴ 20
0
votes
11
replies
3.5k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 5.6 years ago by • 0 • written 12.2 years ago by 21k
0
votes
1
reply
968
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 12.2 years ago by 65k • written 12.2 years ago by ★ 13k
0
votes
2
replies
1.2k
views
DEseq
ASSIGN ASSIGN
updated 12.2 years ago by ★ 6.0k • written 12.2 years ago by ▴ 30
0
votes
2
replies
1.2k
views
htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 12.3 years ago by ★ 11k • written 12.3 years ago by ▴ 70
0
votes
4
replies
1.5k
views
problem in reading bam files with EDASeq
Rsamtools EDASeq ASSIGN Rsamtools EDASeq ASSIGN
updated 12.3 years ago by ▴ 950 • written 12.3 years ago by ▴ 500
0
votes
0
replies
1.4k
views
limma - 2-color agilent microarray, GO annotation
Microarray Annotation GO Organism limma GOstats oligo ASSIGN Microarray Annotation GO
12.3 years ago Gordon Smyth 50k
0
votes
1
reply
1.0k
views
goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
12.5 years ago Matthew Young ▴ 50
1
vote
3
replies
1.3k
views
Limma and Names Assignment
ASSIGN ASSIGN
written 12.5 years ago by ▴ 760
0
votes
0
replies
1.4k
views
illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
12.6 years ago Mark Cowley ▴ 910
0
votes
0
replies
836
views
"timecourse" package, problem with ordering of samples.
ASSIGN ASSIGN
12.6 years ago dha 2001 ▴ 30
0
votes
0
replies
1.2k
views
doubt in HTqPCR
Cancer ddCt cycle HTqPCR ASSIGN Cancer ddCt cycle HTqPCR ASSIGN
12.6 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.6k
views
plotting probes along a chromosome
graph GenomeGraphs ASSIGN graph GenomeGraphs ASSIGN
updated 12.8 years ago by ▴ 550 • written 12.8 years ago by ▴ 240
0
votes
1
reply
4.2k
views
simpleafy plots
ASSIGN ASSIGN
updated 13.0 years ago by 65k • written 13.0 years ago by ★ 1.5k
0
votes
1
reply
921
views
Using Sample IDs from Sample Name column
ASSIGN ASSIGN
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 10
0
votes
3
replies
1.2k
views
working with two factors in DESeq to analyze RNA-seq
DESeq ASSIGN DESeq ASSIGN
updated 13.2 years ago by 50k • written 13.2 years ago by ▴ 150
0
votes
1
reply
1.0k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation GO cdf probe affy convert ASSIGN Annotation GO cdf probe affy convert
updated 13.3 years ago by ▴ 90 • written 13.3 years ago by 65k
0
votes
0
replies
918
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation probe convert ASSIGN Annotation probe convert ASSIGN
13.3 years ago Xiaowei Guan ▴ 90
0
votes
9
replies
2.8k
views
Conversion of affymetrix cell file to raw text file
Microarray probe ASSIGN Microarray probe ASSIGN
13.4 years ago viritha kaza ▴ 580
0
votes
3
replies
1.3k
views
Question about clustering and cluster validation
ASSIGN ASSIGN
updated 13.4 years ago by ▴ 20 • written 13.4 years ago by ▴ 370
0
votes
8
replies
2.9k
views
biomaRt - batch query for chromosome location to gene identifier?
biomaRt ASSIGN biomaRt ASSIGN
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 120
0
votes
1
reply
1.3k
views
Bootstrapping paired samples and tiny groups
ASSIGN ASSIGN
updated 13.6 years ago by ★ 6.0k • written 13.6 years ago by ▴ 830
0
votes
2
replies
1.3k
views
error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 13.8 years ago by ▴ 500 • written 13.8 years ago by ▴ 100
0
votes
3
replies
1.2k
views
mogene10stprobeset.db error
Normalization ASSIGN Normalization ASSIGN
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 170
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards • All
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Locations • All
Canada, 4 minutes ago
Wageningen University, Wageningen, the Netherlands, 10 minutes ago
France, 22 minutes ago
United States, 40 minutes ago
Canada, 40 minutes ago
Traffic: 999 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6