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bigwig
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1.4k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
18 months ago • updated 15 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 20 months ago by
complaintguide
• 0 • written 20 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.2 years ago
bas_work
▴ 30
0
votes
5
replies
1.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.1 years ago
lsilva.m
• 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.6 years ago by
kaur.alasoo
▴ 30 • written 6.6 years ago by
borgmichael
• 0
3
votes
15
replies
3.0k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.1k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.2k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.2 years ago by
laurent.lacroix
▴ 30 • written 8.2 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
dborgesrmit
• 0
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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