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bigwig
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bigwig to counts
DESeq2
edgeR
bigwig
limma
18 months ago • updated 15 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 20 months ago by
complaintguide
• 0 • written 20 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.2 years ago
bas_work
▴ 30
0
votes
5
replies
1.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.1 years ago
lsilva.m
• 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.6 years ago by
kaur.alasoo
▴ 30 • written 6.6 years ago by
borgmichael
• 0
3
votes
15
replies
3.0k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.2k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.3k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.2 years ago by
laurent.lacroix
▴ 30 • written 8.3 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
dborgesrmit
• 0
10 results • Page
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Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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