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News: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia BioCAsia Conferences Events BioC
written 3.0 years ago by ▴ 760
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can't update bioconductor 3.18
BioCor bioc BiocVersion
2.0 years ago feifan • 0
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JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc Bioconductor
updated 4.0 years ago by 16k • written 4.0 years ago by ▴ 20
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Multiple R versions
R bioc
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
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BioC happening in 2018?
BioC 2018 Course
8.2 years ago s.munster ▴ 40
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Errors installing RforProteomics
Bioc package installation rforproteomics
updated 9.7 years ago by 1.6k • written 9.7 years ago by • 0
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Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
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Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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